Strain Fitness in Xanthobacter sp. DMC5 around GFF3615

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3614 and GFF3615 are separated by 43 nucleotidesGFF3615 and GFF3616 are separated by 538 nucleotides GFF3614 - ATP-dependent DNA helicase Rep, at 475,720 to 477,159 GFF3614 GFF3615 - DNA replication and repair protein RecF, at 477,203 to 479,011 GFF3615 GFF3616 - hypothetical protein, at 479,550 to 479,858 GFF3616 Position (kb) 477 478 479 480Strain fitness (log2 ratio) -2 -1 0 1 2at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.249 kb on - strand, within GFF3614at 476.249 kb on - strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.915 kb on + strand, within GFF3614at 476.915 kb on + strand, within GFF3614at 476.938 kb on + strand, within GFF3614at 476.938 kb on + strand, within GFF3614at 476.939 kb on - strand, within GFF3614at 476.939 kb on - strand, within GFF3614at 476.939 kb on - strand, within GFF3614at 476.982 kb on + strand, within GFF3614at 476.983 kb on - strand, within GFF3614at 476.983 kb on - strand, within GFF3614at 477.066 kb on + strandat 477.066 kb on + strandat 477.066 kb on + strandat 477.306 kb on + strandat 477.306 kb on + strandat 477.306 kb on + strandat 477.306 kb on + strandat 477.307 kb on - strandat 477.307 kb on - strandat 477.307 kb on - strandat 477.307 kb on - strandat 477.307 kb on - strandat 477.307 kb on - strandat 477.514 kb on + strand, within GFF3615at 477.514 kb on + strand, within GFF3615at 477.515 kb on - strand, within GFF3615at 477.515 kb on - strand, within GFF3615at 477.515 kb on - strand, within GFF3615at 477.571 kb on + strand, within GFF3615at 477.673 kb on - strand, within GFF3615at 477.772 kb on + strand, within GFF3615at 477.772 kb on + strand, within GFF3615at 477.772 kb on + strand, within GFF3615at 477.772 kb on + strand, within GFF3615at 477.772 kb on + strand, within GFF3615at 477.772 kb on + strand, within GFF3615at 477.773 kb on - strand, within GFF3615at 477.773 kb on - strand, within GFF3615at 477.773 kb on - strand, within GFF3615at 477.773 kb on - strand, within GFF3615at 477.773 kb on - strand, within GFF3615at 477.773 kb on - strand, within GFF3615at 477.973 kb on + strand, within GFF3615at 477.974 kb on - strand, within GFF3615at 477.974 kb on - strand, within GFF3615at 477.974 kb on - strand, within GFF3615at 477.974 kb on - strand, within GFF3615at 477.978 kb on + strand, within GFF3615at 477.978 kb on + strand, within GFF3615at 477.979 kb on - strand, within GFF3615at 478.123 kb on + strand, within GFF3615at 478.123 kb on + strand, within GFF3615at 478.124 kb on - strand, within GFF3615at 478.205 kb on + strand, within GFF3615at 478.206 kb on - strand, within GFF3615at 478.221 kb on - strand, within GFF3615at 478.496 kb on + strand, within GFF3615at 478.496 kb on + strand, within GFF3615at 478.496 kb on + strand, within GFF3615at 478.496 kb on + strand, within GFF3615at 478.496 kb on + strand, within GFF3615at 478.497 kb on - strand, within GFF3615at 478.497 kb on - strand, within GFF3615at 478.497 kb on - strand, within GFF3615at 478.497 kb on - strand, within GFF3615at 478.497 kb on - strand, within GFF3615at 478.497 kb on - strand, within GFF3615at 478.532 kb on + strand, within GFF3615at 478.532 kb on + strand, within GFF3615at 478.532 kb on + strand, within GFF3615at 478.532 kb on + strand, within GFF3615at 478.532 kb on + strand, within GFF3615at 478.533 kb on - strand, within GFF3615at 478.533 kb on - strand, within GFF3615at 478.533 kb on - strand, within GFF3615at 478.533 kb on - strand, within GFF3615at 478.566 kb on + strand, within GFF3615at 478.566 kb on + strand, within GFF3615at 478.567 kb on - strand, within GFF3615at 478.567 kb on - strand, within GFF3615at 478.567 kb on - strand, within GFF3615at 478.606 kb on + strand, within GFF3615at 478.606 kb on + strand, within GFF3615at 478.606 kb on + strand, within GFF3615at 478.606 kb on + strand, within GFF3615at 478.606 kb on + strand, within GFF3615at 478.606 kb on + strand, within GFF3615at 478.606 kb on + strand, within GFF3615at 478.606 kb on + strand, within GFF3615at 478.607 kb on - strand, within GFF3615at 478.607 kb on - strand, within GFF3615at 478.607 kb on - strand, within GFF3615at 478.607 kb on - strand, within GFF3615at 478.607 kb on - strand, within GFF3615at 478.608 kb on + strand, within GFF3615at 478.608 kb on + strand, within GFF3615at 478.608 kb on + strand, within GFF3615at 478.609 kb on - strand, within GFF3615at 478.663 kb on + strand, within GFF3615at 478.663 kb on + strand, within GFF3615at 478.663 kb on + strand, within GFF3615at 478.663 kb on + strand, within GFF3615at 478.663 kb on + strand, within GFF3615at 478.664 kb on - strand, within GFF3615at 479.102 kb on + strandat 479.103 kb on - strandat 479.119 kb on + strandat 479.119 kb on + strandat 479.119 kb on + strandat 479.119 kb on + strandat 479.119 kb on + strandat 479.120 kb on - strandat 479.120 kb on - strandat 479.120 kb on - strandat 479.120 kb on - strandat 479.120 kb on - strandat 479.193 kb on + strandat 479.193 kb on + strandat 479.194 kb on - strandat 479.204 kb on + strandat 479.205 kb on - strandat 479.205 kb on - strandat 479.207 kb on - strandat 479.311 kb on + strandat 479.312 kb on - strandat 479.449 kb on + strandat 479.450 kb on - strandat 479.468 kb on + strandat 479.468 kb on + strandat 479.469 kb on - strandat 479.473 kb on + strandat 479.473 kb on + strandat 479.474 kb on - strandat 479.561 kb on + strandat 479.667 kb on + strand, within GFF3616at 479.667 kb on + strand, within GFF3616at 479.667 kb on + strand, within GFF3616at 479.667 kb on + strand, within GFF3616at 479.728 kb on + strand, within GFF3616at 479.728 kb on + strand, within GFF3616at 479.728 kb on + strand, within GFF3616at 479.729 kb on - strand, within GFF3616at 479.729 kb on - strand, within GFF3616at 479.729 kb on - strand, within GFF3616at 479.957 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.962 kb on + strandat 479.963 kb on - strandat 479.963 kb on - strandat 479.963 kb on - strandat 479.963 kb on - strandat 479.963 kb on - strandat 479.963 kb on - strandat 479.963 kb on - strandat 479.963 kb on - strandat 479.963 kb on - strandat 479.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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476,248 + GFF3614 0.37 +1.4
476,248 + GFF3614 0.37 +0.3
476,248 + GFF3614 0.37 +0.3
476,248 + GFF3614 0.37 -0.4
476,248 + GFF3614 0.37 -0.8
476,248 + GFF3614 0.37 -1.2
476,249 - GFF3614 0.37 +0.3
476,249 - GFF3614 0.37 +0.5
476,720 + GFF3614 0.69 -0.4
476,720 + GFF3614 0.69 -1.4
476,720 + GFF3614 0.69 -0.5
476,720 + GFF3614 0.69 -0.0
476,720 + GFF3614 0.69 -0.5
476,720 + GFF3614 0.69 -0.3
476,720 + GFF3614 0.69 +0.7
476,721 - GFF3614 0.70 +0.3
476,721 - GFF3614 0.70 +0.3
476,721 - GFF3614 0.70 +0.1
476,721 - GFF3614 0.70 +0.2
476,721 - GFF3614 0.70 -0.1
476,915 + GFF3614 0.83 +1.0
476,915 + GFF3614 0.83 -0.6
476,938 + GFF3614 0.85 +0.1
476,938 + GFF3614 0.85 -1.2
476,939 - GFF3614 0.85 -0.0
476,939 - GFF3614 0.85 -0.7
476,939 - GFF3614 0.85 -1.1
476,982 + GFF3614 0.88 +0.5
476,983 - GFF3614 0.88 -0.5
476,983 - GFF3614 0.88 -0.4
477,066 + +0.2
477,066 + +0.2
477,066 + -0.8
477,306 + -1.6
477,306 + +0.5
477,306 + -0.4
477,306 + -1.1
477,307 - -0.2
477,307 - +0.3
477,307 - -1.8
477,307 - -0.7
477,307 - -0.3
477,307 - -1.8
477,514 + GFF3615 0.17 +0.2
477,514 + GFF3615 0.17 -0.8
477,515 - GFF3615 0.17 +0.2
477,515 - GFF3615 0.17 -1.1
477,515 - GFF3615 0.17 +0.5
477,571 + GFF3615 0.20 +1.3
477,673 - GFF3615 0.26 +1.0
477,772 + GFF3615 0.31 -1.6
477,772 + GFF3615 0.31 -0.8
477,772 + GFF3615 0.31 -1.9
477,772 + GFF3615 0.31 -1.0
477,772 + GFF3615 0.31 -0.2
477,772 + GFF3615 0.31 -0.1
477,773 - GFF3615 0.32 +1.9
477,773 - GFF3615 0.32 +1.0
477,773 - GFF3615 0.32 -0.5
477,773 - GFF3615 0.32 -2.0
477,773 - GFF3615 0.32 +0.3
477,773 - GFF3615 0.32 +0.1
477,973 + GFF3615 0.43 -0.5
477,974 - GFF3615 0.43 -1.5
477,974 - GFF3615 0.43 -0.0
477,974 - GFF3615 0.43 -0.3
477,974 - GFF3615 0.43 +0.8
477,978 + GFF3615 0.43 +0.3
477,978 + GFF3615 0.43 -0.6
477,979 - GFF3615 0.43 +0.7
478,123 + GFF3615 0.51 +0.5
478,123 + GFF3615 0.51 -0.3
478,124 - GFF3615 0.51 -0.9
478,205 + GFF3615 0.55 +1.2
478,206 - GFF3615 0.55 +0.5
478,221 - GFF3615 0.56 -1.0
478,496 + GFF3615 0.71 -0.3
478,496 + GFF3615 0.71 +0.7
478,496 + GFF3615 0.71 +0.2
478,496 + GFF3615 0.71 -1.1
478,496 + GFF3615 0.71 +0.8
478,497 - GFF3615 0.72 +1.3
478,497 - GFF3615 0.72 +0.3
478,497 - GFF3615 0.72 +0.2
478,497 - GFF3615 0.72 -1.0
478,497 - GFF3615 0.72 -1.5
478,497 - GFF3615 0.72 -0.0
478,532 + GFF3615 0.73 -0.8
478,532 + GFF3615 0.73 -1.1
478,532 + GFF3615 0.73 +0.3
478,532 + GFF3615 0.73 +0.1
478,532 + GFF3615 0.73 -0.7
478,533 - GFF3615 0.74 +0.0
478,533 - GFF3615 0.74 +0.0
478,533 - GFF3615 0.74 -0.4
478,533 - GFF3615 0.74 +0.6
478,566 + GFF3615 0.75 +0.7
478,566 + GFF3615 0.75 -0.3
478,567 - GFF3615 0.75 -0.8
478,567 - GFF3615 0.75 -0.2
478,567 - GFF3615 0.75 -0.2
478,606 + GFF3615 0.78 -0.2
478,606 + GFF3615 0.78 +0.7
478,606 + GFF3615 0.78 +0.5
478,606 + GFF3615 0.78 +0.1
478,606 + GFF3615 0.78 +1.1
478,606 + GFF3615 0.78 -1.2
478,606 + GFF3615 0.78 +0.4
478,606 + GFF3615 0.78 +0.1
478,607 - GFF3615 0.78 -0.0
478,607 - GFF3615 0.78 +0.3
478,607 - GFF3615 0.78 +0.8
478,607 - GFF3615 0.78 -0.3
478,607 - GFF3615 0.78 +1.0
478,608 + GFF3615 0.78 +0.7
478,608 + GFF3615 0.78 -0.1
478,608 + GFF3615 0.78 -0.0
478,609 - GFF3615 0.78 -0.3
478,663 + GFF3615 0.81 +0.1
478,663 + GFF3615 0.81 -1.0
478,663 + GFF3615 0.81 -0.6
478,663 + GFF3615 0.81 +1.2
478,663 + GFF3615 0.81 -1.2
478,664 - GFF3615 0.81 +0.2
479,102 + +0.4
479,103 - +0.3
479,119 + +1.2
479,119 + +0.4
479,119 + +0.2
479,119 + -1.0
479,119 + +0.8
479,120 - +0.4
479,120 - -0.8
479,120 - -2.4
479,120 - -0.2
479,120 - +0.4
479,193 + +0.6
479,193 + +1.3
479,194 - -1.1
479,204 + -0.6
479,205 - +0.7
479,205 - +0.3
479,207 - -0.5
479,311 + +0.1
479,312 - +0.3
479,449 + +0.9
479,450 - +1.2
479,468 + +0.2
479,468 + -0.2
479,469 - +0.5
479,473 + +0.8
479,473 + +0.5
479,474 - -1.7
479,561 + +0.3
479,667 + GFF3616 0.38 +0.9
479,667 + GFF3616 0.38 -1.4
479,667 + GFF3616 0.38 +0.5
479,667 + GFF3616 0.38 -0.1
479,728 + GFF3616 0.58 -0.6
479,728 + GFF3616 0.58 +0.7
479,728 + GFF3616 0.58 +0.5
479,729 - GFF3616 0.58 -1.2
479,729 - GFF3616 0.58 +0.1
479,729 - GFF3616 0.58 +1.2
479,957 + +0.3
479,962 + -0.2
479,962 + +1.1
479,962 + -1.1
479,962 + +1.5
479,962 + -0.7
479,962 + +0.3
479,962 + -1.6
479,962 + -1.4
479,962 + +0.8
479,962 + -0.7
479,962 + +0.1
479,963 - +0.1
479,963 - -0.0
479,963 - -0.4
479,963 - -0.7
479,963 - -1.0
479,963 - +1.9
479,963 - +0.3
479,963 - -0.4
479,963 - -1.1
479,963 - +0.5

Or see this region's nucleotide sequence