Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3612 and GFF3613 overlap by 14 nucleotides GFF3613 and GFF3614 overlap by 4 nucleotides GFF3614 and GFF3615 are separated by 43 nucleotides
GFF3612 - hypothetical protein, at 472,348 to 475,077
GFF3612
GFF3613 - hypothetical protein, at 475,064 to 475,723
GFF3613
GFF3614 - ATP-dependent DNA helicase Rep, at 475,720 to 477,159
GFF3614
GFF3615 - DNA replication and repair protein RecF, at 477,203 to 479,011
GFF3615
Position (kb) 475
476
477
478 Strain fitness (log2 ratio) -2
-1
0
1
2 at 474.759 kb on + strand, within GFF3612 at 474.759 kb on + strand, within GFF3612 at 474.759 kb on + strand, within GFF3612 at 474.759 kb on + strand, within GFF3612 at 474.759 kb on + strand, within GFF3612 at 474.759 kb on + strand, within GFF3612 at 474.760 kb on - strand, within GFF3612 at 474.760 kb on - strand, within GFF3612 at 474.760 kb on - strand, within GFF3612 at 474.760 kb on - strand, within GFF3612 at 474.858 kb on + strand at 474.982 kb on + strand at 474.982 kb on + strand at 474.982 kb on + strand at 474.983 kb on - strand at 474.983 kb on - strand at 474.998 kb on + strand at 474.998 kb on + strand at 475.010 kb on + strand at 475.010 kb on + strand at 475.010 kb on + strand at 475.011 kb on - strand at 475.011 kb on - strand at 475.011 kb on - strand at 475.088 kb on + strand at 475.088 kb on + strand at 475.088 kb on + strand at 475.129 kb on + strand at 475.129 kb on + strand at 475.129 kb on + strand at 475.129 kb on + strand at 475.130 kb on - strand, within GFF3613 at 475.130 kb on - strand, within GFF3613 at 475.130 kb on - strand, within GFF3613 at 475.132 kb on + strand, within GFF3613 at 475.132 kb on + strand, within GFF3613 at 475.133 kb on - strand, within GFF3613 at 475.147 kb on - strand, within GFF3613 at 475.147 kb on - strand, within GFF3613 at 475.161 kb on + strand, within GFF3613 at 475.161 kb on + strand, within GFF3613 at 475.162 kb on - strand, within GFF3613 at 475.202 kb on - strand, within GFF3613 at 475.263 kb on + strand, within GFF3613 at 475.263 kb on + strand, within GFF3613 at 475.263 kb on + strand, within GFF3613 at 475.263 kb on + strand, within GFF3613 at 475.263 kb on + strand, within GFF3613 at 475.263 kb on + strand, within GFF3613 at 475.264 kb on - strand, within GFF3613 at 475.264 kb on - strand, within GFF3613 at 475.277 kb on + strand, within GFF3613 at 475.278 kb on - strand, within GFF3613 at 475.384 kb on + strand, within GFF3613 at 475.385 kb on - strand, within GFF3613 at 475.385 kb on - strand, within GFF3613 at 475.407 kb on + strand, within GFF3613 at 475.494 kb on + strand, within GFF3613 at 475.494 kb on + strand, within GFF3613 at 475.494 kb on + strand, within GFF3613 at 475.495 kb on - strand, within GFF3613 at 475.495 kb on - strand, within GFF3613 at 475.495 kb on - strand, within GFF3613 at 475.515 kb on + strand, within GFF3613 at 475.515 kb on + strand, within GFF3613 at 475.516 kb on - strand, within GFF3613 at 475.516 kb on - strand, within GFF3613 at 475.691 kb on - strand at 475.723 kb on + strand at 475.723 kb on + strand at 475.724 kb on - strand at 475.724 kb on - strand at 475.724 kb on - strand at 475.724 kb on - strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.768 kb on + strand at 475.769 kb on - strand at 475.769 kb on - strand at 475.769 kb on - strand at 475.769 kb on - strand at 475.769 kb on - strand at 475.799 kb on + strand at 475.799 kb on + strand at 475.799 kb on + strand at 475.799 kb on + strand at 475.800 kb on - strand at 475.800 kb on - strand at 475.800 kb on - strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.849 kb on - strand at 475.849 kb on - strand at 475.849 kb on - strand at 475.849 kb on - strand at 475.860 kb on + strand at 475.860 kb on + strand at 475.860 kb on + strand at 475.926 kb on + strand, within GFF3614 at 475.926 kb on + strand, within GFF3614 at 475.927 kb on - strand, within GFF3614 at 475.954 kb on + strand, within GFF3614 at 475.955 kb on - strand, within GFF3614 at 476.015 kb on + strand, within GFF3614 at 476.016 kb on - strand, within GFF3614 at 476.016 kb on - strand, within GFF3614 at 476.052 kb on + strand, within GFF3614 at 476.110 kb on + strand, within GFF3614 at 476.110 kb on + strand, within GFF3614 at 476.111 kb on - strand, within GFF3614 at 476.248 kb on + strand, within GFF3614 at 476.248 kb on + strand, within GFF3614 at 476.248 kb on + strand, within GFF3614 at 476.248 kb on + strand, within GFF3614 at 476.248 kb on + strand, within GFF3614 at 476.248 kb on + strand, within GFF3614 at 476.249 kb on - strand, within GFF3614 at 476.249 kb on - strand, within GFF3614 at 476.720 kb on + strand, within GFF3614 at 476.720 kb on + strand, within GFF3614 at 476.720 kb on + strand, within GFF3614 at 476.720 kb on + strand, within GFF3614 at 476.720 kb on + strand, within GFF3614 at 476.720 kb on + strand, within GFF3614 at 476.720 kb on + strand, within GFF3614 at 476.721 kb on - strand, within GFF3614 at 476.721 kb on - strand, within GFF3614 at 476.721 kb on - strand, within GFF3614 at 476.721 kb on - strand, within GFF3614 at 476.721 kb on - strand, within GFF3614 at 476.915 kb on + strand, within GFF3614 at 476.915 kb on + strand, within GFF3614 at 476.938 kb on + strand, within GFF3614 at 476.938 kb on + strand, within GFF3614 at 476.939 kb on - strand, within GFF3614 at 476.939 kb on - strand, within GFF3614 at 476.939 kb on - strand, within GFF3614 at 476.982 kb on + strand, within GFF3614 at 476.983 kb on - strand, within GFF3614 at 476.983 kb on - strand, within GFF3614 at 477.066 kb on + strand at 477.066 kb on + strand at 477.066 kb on + strand at 477.306 kb on + strand at 477.306 kb on + strand at 477.306 kb on + strand at 477.306 kb on + strand at 477.307 kb on - strand at 477.307 kb on - strand at 477.307 kb on - strand at 477.307 kb on - strand at 477.307 kb on - strand at 477.307 kb on - strand at 477.514 kb on + strand, within GFF3615 at 477.514 kb on + strand, within GFF3615 at 477.515 kb on - strand, within GFF3615 at 477.515 kb on - strand, within GFF3615 at 477.515 kb on - strand, within GFF3615 at 477.571 kb on + strand, within GFF3615 at 477.673 kb on - strand, within GFF3615 at 477.772 kb on + strand, within GFF3615 at 477.772 kb on + strand, within GFF3615 at 477.772 kb on + strand, within GFF3615 at 477.772 kb on + strand, within GFF3615 at 477.772 kb on + strand, within GFF3615 at 477.772 kb on + strand, within GFF3615 at 477.773 kb on - strand, within GFF3615 at 477.773 kb on - strand, within GFF3615 at 477.773 kb on - strand, within GFF3615 at 477.773 kb on - strand, within GFF3615 at 477.773 kb on - strand, within GFF3615 at 477.773 kb on - strand, within GFF3615 at 477.973 kb on + strand, within GFF3615 at 477.974 kb on - strand, within GFF3615 at 477.974 kb on - strand, within GFF3615 at 477.974 kb on - strand, within GFF3615 at 477.974 kb on - strand, within GFF3615 at 477.978 kb on + strand, within GFF3615 at 477.978 kb on + strand, within GFF3615 at 477.979 kb on - strand, within GFF3615 at 478.123 kb on + strand, within GFF3615 at 478.123 kb on + strand, within GFF3615 at 478.124 kb on - strand, within GFF3615
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 474,759 + GFF3612 0.88 +0.4 474,759 + GFF3612 0.88 +0.1 474,759 + GFF3612 0.88 -0.7 474,759 + GFF3612 0.88 -1.0 474,759 + GFF3612 0.88 -0.4 474,759 + GFF3612 0.88 +0.9 474,760 - GFF3612 0.88 -0.2 474,760 - GFF3612 0.88 -0.7 474,760 - GFF3612 0.88 -0.2 474,760 - GFF3612 0.88 -0.1 474,858 + +0.7 474,982 + -1.0 474,982 + -2.6 474,982 + +2.0 474,983 - +0.5 474,983 - -0.1 474,998 + -1.5 474,998 + -0.1 475,010 + -0.3 475,010 + +0.6 475,010 + +0.9 475,011 - +0.4 475,011 - +0.5 475,011 - -0.2 475,088 + -0.6 475,088 + +1.0 475,088 + +0.2 475,129 + +0.9 475,129 + -0.8 475,129 + +0.1 475,129 + +1.6 475,130 - GFF3613 0.10 -1.1 475,130 - GFF3613 0.10 -0.7 475,130 - GFF3613 0.10 +0.5 475,132 + GFF3613 0.10 +0.2 475,132 + GFF3613 0.10 -0.1 475,133 - GFF3613 0.10 -0.4 475,147 - GFF3613 0.13 +0.1 475,147 - GFF3613 0.13 +0.4 475,161 + GFF3613 0.15 -0.1 475,161 + GFF3613 0.15 +0.7 475,162 - GFF3613 0.15 +0.4 475,202 - GFF3613 0.21 -0.0 475,263 + GFF3613 0.30 -1.2 475,263 + GFF3613 0.30 -0.3 475,263 + GFF3613 0.30 -1.6 475,263 + GFF3613 0.30 +0.6 475,263 + GFF3613 0.30 +0.3 475,263 + GFF3613 0.30 -0.5 475,264 - GFF3613 0.30 +0.2 475,264 - GFF3613 0.30 +0.3 475,277 + GFF3613 0.32 -0.3 475,278 - GFF3613 0.32 -0.4 475,384 + GFF3613 0.48 -0.1 475,385 - GFF3613 0.49 +0.1 475,385 - GFF3613 0.49 +0.2 475,407 + GFF3613 0.52 -0.4 475,494 + GFF3613 0.65 +0.4 475,494 + GFF3613 0.65 -0.1 475,494 + GFF3613 0.65 +0.8 475,495 - GFF3613 0.65 +0.1 475,495 - GFF3613 0.65 -0.3 475,495 - GFF3613 0.65 +0.4 475,515 + GFF3613 0.68 -0.4 475,515 + GFF3613 0.68 -0.1 475,516 - GFF3613 0.68 +0.8 475,516 - GFF3613 0.68 -1.0 475,691 - +0.0 475,723 + -0.8 475,723 + +0.7 475,724 - +0.3 475,724 - +0.0 475,724 - -0.4 475,724 - +0.3 475,768 + +1.1 475,768 + +0.3 475,768 + +1.6 475,768 + -0.3 475,768 + +0.3 475,768 + -0.4 475,768 + -0.0 475,768 + -1.0 475,768 + +0.3 475,768 + -1.0 475,769 - -0.2 475,769 - -0.2 475,769 - +0.9 475,769 - +0.6 475,769 - -2.2 475,799 + -2.3 475,799 + -0.2 475,799 + -0.3 475,799 + -2.5 475,800 - +0.9 475,800 - +0.1 475,800 - +0.9 475,848 + +0.1 475,848 + -0.1 475,848 + -0.8 475,848 + -0.6 475,848 + -0.4 475,848 + +0.0 475,848 + -0.9 475,849 - -0.4 475,849 - -0.0 475,849 - +1.3 475,849 - -0.5 475,860 + -1.5 475,860 + -0.4 475,860 + -0.2 475,926 + GFF3614 0.14 -0.2 475,926 + GFF3614 0.14 -0.2 475,927 - GFF3614 0.14 +0.1 475,954 + GFF3614 0.16 -0.3 475,955 - GFF3614 0.16 +0.3 476,015 + GFF3614 0.20 +0.2 476,016 - GFF3614 0.21 -0.9 476,016 - GFF3614 0.21 +0.4 476,052 + GFF3614 0.23 -0.5 476,110 + GFF3614 0.27 +1.0 476,110 + GFF3614 0.27 +0.4 476,111 - GFF3614 0.27 -1.3 476,248 + GFF3614 0.37 +1.4 476,248 + GFF3614 0.37 +0.3 476,248 + GFF3614 0.37 +0.3 476,248 + GFF3614 0.37 -0.4 476,248 + GFF3614 0.37 -0.8 476,248 + GFF3614 0.37 -1.2 476,249 - GFF3614 0.37 +0.3 476,249 - GFF3614 0.37 +0.5 476,720 + GFF3614 0.69 -0.4 476,720 + GFF3614 0.69 -1.4 476,720 + GFF3614 0.69 -0.5 476,720 + GFF3614 0.69 -0.0 476,720 + GFF3614 0.69 -0.5 476,720 + GFF3614 0.69 -0.3 476,720 + GFF3614 0.69 +0.7 476,721 - GFF3614 0.70 +0.3 476,721 - GFF3614 0.70 +0.3 476,721 - GFF3614 0.70 +0.1 476,721 - GFF3614 0.70 +0.2 476,721 - GFF3614 0.70 -0.1 476,915 + GFF3614 0.83 +1.0 476,915 + GFF3614 0.83 -0.6 476,938 + GFF3614 0.85 +0.1 476,938 + GFF3614 0.85 -1.2 476,939 - GFF3614 0.85 -0.0 476,939 - GFF3614 0.85 -0.7 476,939 - GFF3614 0.85 -1.1 476,982 + GFF3614 0.88 +0.5 476,983 - GFF3614 0.88 -0.5 476,983 - GFF3614 0.88 -0.4 477,066 + +0.2 477,066 + +0.2 477,066 + -0.8 477,306 + -1.6 477,306 + +0.5 477,306 + -0.4 477,306 + -1.1 477,307 - -0.2 477,307 - +0.3 477,307 - -1.8 477,307 - -0.7 477,307 - -0.3 477,307 - -1.8 477,514 + GFF3615 0.17 +0.2 477,514 + GFF3615 0.17 -0.8 477,515 - GFF3615 0.17 +0.2 477,515 - GFF3615 0.17 -1.1 477,515 - GFF3615 0.17 +0.5 477,571 + GFF3615 0.20 +1.3 477,673 - GFF3615 0.26 +1.0 477,772 + GFF3615 0.31 -1.6 477,772 + GFF3615 0.31 -0.8 477,772 + GFF3615 0.31 -1.9 477,772 + GFF3615 0.31 -1.0 477,772 + GFF3615 0.31 -0.2 477,772 + GFF3615 0.31 -0.1 477,773 - GFF3615 0.32 +1.9 477,773 - GFF3615 0.32 +1.0 477,773 - GFF3615 0.32 -0.5 477,773 - GFF3615 0.32 -2.0 477,773 - GFF3615 0.32 +0.3 477,773 - GFF3615 0.32 +0.1 477,973 + GFF3615 0.43 -0.5 477,974 - GFF3615 0.43 -1.5 477,974 - GFF3615 0.43 -0.0 477,974 - GFF3615 0.43 -0.3 477,974 - GFF3615 0.43 +0.8 477,978 + GFF3615 0.43 +0.3 477,978 + GFF3615 0.43 -0.6 477,979 - GFF3615 0.43 +0.7 478,123 + GFF3615 0.51 +0.5 478,123 + GFF3615 0.51 -0.3 478,124 - GFF3615 0.51 -0.9
Or see this region's nucleotide sequence