Strain Fitness in Xanthobacter sp. DMC5 around GFF3605

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3603 and GFF3604 are separated by 166 nucleotidesGFF3604 and GFF3605 are separated by 2 nucleotidesGFF3605 and GFF3606 are separated by 370 nucleotides GFF3603 - hypothetical protein, at 465,380 to 466,186 GFF3603 GFF3604 - hypothetical protein, at 466,353 to 466,805 GFF3604 GFF3605 - hypothetical protein, at 466,808 to 467,383 GFF3605 GFF3606 - hypothetical protein, at 467,754 to 468,341 GFF3606 Position (kb) 466 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 465.951 kb on + strand, within GFF3603at 465.952 kb on - strand, within GFF3603at 465.952 kb on - strand, within GFF3603at 465.952 kb on - strand, within GFF3603at 465.989 kb on + strand, within GFF3603at 466.052 kb on + strand, within GFF3603at 466.053 kb on - strand, within GFF3603at 466.071 kb on - strand, within GFF3603at 466.121 kb on + strandat 466.121 kb on + strandat 466.175 kb on + strandat 466.176 kb on - strandat 466.344 kb on + strandat 466.439 kb on + strand, within GFF3604at 466.439 kb on + strand, within GFF3604at 466.439 kb on + strand, within GFF3604at 466.439 kb on + strand, within GFF3604at 466.440 kb on - strand, within GFF3604at 466.440 kb on - strand, within GFF3604at 466.574 kb on + strand, within GFF3604at 466.616 kb on + strand, within GFF3604at 466.631 kb on - strand, within GFF3604at 466.717 kb on + strand, within GFF3604at 466.717 kb on + strand, within GFF3604at 466.741 kb on - strand, within GFF3604at 466.792 kb on + strandat 466.792 kb on + strandat 466.792 kb on + strandat 466.792 kb on + strandat 466.792 kb on + strandat 466.792 kb on + strandat 466.793 kb on - strandat 466.793 kb on - strandat 466.827 kb on + strandat 466.827 kb on + strandat 466.827 kb on + strandat 466.827 kb on + strandat 466.828 kb on - strandat 466.828 kb on - strandat 466.828 kb on - strandat 467.019 kb on + strand, within GFF3605at 467.019 kb on + strand, within GFF3605at 467.019 kb on + strand, within GFF3605at 467.019 kb on + strand, within GFF3605at 467.089 kb on - strand, within GFF3605at 467.089 kb on - strand, within GFF3605at 467.121 kb on + strand, within GFF3605at 467.121 kb on + strand, within GFF3605at 467.122 kb on - strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.292 kb on + strand, within GFF3605at 467.293 kb on - strand, within GFF3605at 467.337 kb on + strandat 467.337 kb on + strandat 467.338 kb on - strandat 467.338 kb on - strandat 467.338 kb on - strandat 467.378 kb on - strandat 467.532 kb on + strandat 467.532 kb on + strandat 467.532 kb on + strandat 467.533 kb on - strandat 467.533 kb on - strandat 467.580 kb on - strandat 467.580 kb on - strandat 467.735 kb on + strandat 467.817 kb on + strand, within GFF3606at 467.879 kb on + strand, within GFF3606at 467.879 kb on + strand, within GFF3606at 467.944 kb on + strand, within GFF3606at 467.944 kb on + strand, within GFF3606at 467.944 kb on + strand, within GFF3606at 467.971 kb on + strand, within GFF3606at 467.971 kb on + strand, within GFF3606at 467.971 kb on + strand, within GFF3606at 468.097 kb on + strand, within GFF3606at 468.097 kb on + strand, within GFF3606at 468.097 kb on + strand, within GFF3606at 468.098 kb on - strand, within GFF3606at 468.187 kb on + strand, within GFF3606at 468.187 kb on + strand, within GFF3606at 468.187 kb on + strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.188 kb on - strand, within GFF3606at 468.253 kb on + strand, within GFF3606at 468.277 kb on + strand, within GFF3606at 468.277 kb on + strand, within GFF3606at 468.278 kb on - strand, within GFF3606

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
465,951 + GFF3603 0.71 +1.2
465,952 - GFF3603 0.71 +0.4
465,952 - GFF3603 0.71 +1.1
465,952 - GFF3603 0.71 +0.5
465,989 + GFF3603 0.75 -0.2
466,052 + GFF3603 0.83 +0.6
466,053 - GFF3603 0.83 +0.4
466,071 - GFF3603 0.86 +0.8
466,121 + +0.0
466,121 + -1.1
466,175 + -1.1
466,176 - -0.3
466,344 + -0.7
466,439 + GFF3604 0.19 +0.3
466,439 + GFF3604 0.19 -0.1
466,439 + GFF3604 0.19 +1.3
466,439 + GFF3604 0.19 -0.1
466,440 - GFF3604 0.19 -1.0
466,440 - GFF3604 0.19 +0.7
466,574 + GFF3604 0.49 -1.4
466,616 + GFF3604 0.58 -0.5
466,631 - GFF3604 0.61 -0.0
466,717 + GFF3604 0.80 +0.5
466,717 + GFF3604 0.80 +0.8
466,741 - GFF3604 0.86 -1.4
466,792 + -1.0
466,792 + -0.2
466,792 + +1.7
466,792 + -0.7
466,792 + -0.9
466,792 + +0.5
466,793 - -0.5
466,793 - -0.6
466,827 + +1.7
466,827 + +1.2
466,827 + -0.3
466,827 + +1.0
466,828 - -0.4
466,828 - -0.7
466,828 - -1.3
467,019 + GFF3605 0.37 -1.5
467,019 + GFF3605 0.37 +0.1
467,019 + GFF3605 0.37 +0.6
467,019 + GFF3605 0.37 -0.6
467,089 - GFF3605 0.49 +0.3
467,089 - GFF3605 0.49 +2.6
467,121 + GFF3605 0.54 -0.4
467,121 + GFF3605 0.54 -0.9
467,122 - GFF3605 0.55 -0.3
467,292 + GFF3605 0.84 +0.9
467,292 + GFF3605 0.84 +0.4
467,292 + GFF3605 0.84 +0.4
467,292 + GFF3605 0.84 +0.2
467,292 + GFF3605 0.84 -0.9
467,292 + GFF3605 0.84 -0.4
467,292 + GFF3605 0.84 +0.2
467,293 - GFF3605 0.84 -0.2
467,337 + +0.9
467,337 + -0.9
467,338 - -1.2
467,338 - +1.2
467,338 - -0.6
467,378 - -0.7
467,532 + -0.3
467,532 + +0.4
467,532 + +0.4
467,533 - +0.4
467,533 - -0.1
467,580 - -0.7
467,580 - +0.1
467,735 + +0.7
467,817 + GFF3606 0.11 -0.4
467,879 + GFF3606 0.21 -1.7
467,879 + GFF3606 0.21 +0.2
467,944 + GFF3606 0.32 +1.5
467,944 + GFF3606 0.32 -1.6
467,944 + GFF3606 0.32 -0.2
467,971 + GFF3606 0.37 +0.0
467,971 + GFF3606 0.37 -0.5
467,971 + GFF3606 0.37 -0.1
468,097 + GFF3606 0.58 -0.5
468,097 + GFF3606 0.58 +0.4
468,097 + GFF3606 0.58 +0.8
468,098 - GFF3606 0.59 +0.9
468,187 + GFF3606 0.74 -0.1
468,187 + GFF3606 0.74 -0.5
468,187 + GFF3606 0.74 +0.1
468,188 - GFF3606 0.74 -1.1
468,188 - GFF3606 0.74 +0.3
468,188 - GFF3606 0.74 -0.1
468,188 - GFF3606 0.74 -0.8
468,188 - GFF3606 0.74 +0.3
468,188 - GFF3606 0.74 +0.1
468,253 + GFF3606 0.85 -1.7
468,277 + GFF3606 0.89 -2.8
468,277 + GFF3606 0.89 -1.4
468,278 - GFF3606 0.89 +0.4

Or see this region's nucleotide sequence