Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3597 and GFF3598 are separated by 53 nucleotides GFF3598 and GFF3599 are separated by 125 nucleotides
GFF3597 - hypothetical protein, at 457,130 to 458,368
GFF3597
GFF3598 - Energy-dependent translational throttle protein EttA, at 458,422 to 460,077
GFF3598
GFF3599 - hypothetical protein, at 460,203 to 460,676
GFF3599
Position (kb) 458
459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 457.443 kb on - strand, within GFF3597 at 457.487 kb on + strand, within GFF3597 at 457.488 kb on - strand, within GFF3597 at 457.488 kb on - strand, within GFF3597 at 457.538 kb on - strand, within GFF3597 at 457.681 kb on - strand, within GFF3597 at 457.683 kb on - strand, within GFF3597 at 457.683 kb on - strand, within GFF3597 at 457.691 kb on - strand, within GFF3597 at 457.714 kb on + strand, within GFF3597 at 457.714 kb on + strand, within GFF3597 at 457.715 kb on - strand, within GFF3597 at 457.756 kb on - strand, within GFF3597 at 457.844 kb on + strand, within GFF3597 at 457.847 kb on + strand, within GFF3597 at 458.055 kb on - strand, within GFF3597 at 458.082 kb on - strand, within GFF3597 at 458.089 kb on + strand, within GFF3597 at 458.090 kb on - strand, within GFF3597 at 458.133 kb on + strand, within GFF3597 at 458.133 kb on + strand, within GFF3597 at 458.133 kb on + strand, within GFF3597 at 458.134 kb on - strand, within GFF3597 at 458.152 kb on + strand, within GFF3597 at 458.153 kb on - strand, within GFF3597 at 458.192 kb on - strand, within GFF3597 at 458.306 kb on + strand at 458.306 kb on + strand at 458.306 kb on + strand at 458.307 kb on - strand at 458.307 kb on - strand at 458.307 kb on - strand at 458.344 kb on + strand at 458.345 kb on - strand at 458.345 kb on - strand at 458.345 kb on - strand at 458.346 kb on + strand at 458.346 kb on + strand at 458.346 kb on + strand at 458.346 kb on + strand at 458.346 kb on + strand at 458.346 kb on + strand at 458.346 kb on + strand at 458.346 kb on + strand at 458.346 kb on + strand at 458.347 kb on - strand at 458.347 kb on - strand at 458.347 kb on - strand at 458.347 kb on - strand at 460.177 kb on - strand at 460.428 kb on + strand, within GFF3599 at 460.428 kb on + strand, within GFF3599 at 460.428 kb on + strand, within GFF3599 at 460.429 kb on - strand, within GFF3599 at 460.429 kb on - strand, within GFF3599 at 460.429 kb on - strand, within GFF3599 at 460.521 kb on + strand, within GFF3599 at 460.521 kb on + strand, within GFF3599 at 460.522 kb on - strand, within GFF3599 at 460.522 kb on - strand, within GFF3599 at 460.522 kb on - strand, within GFF3599 at 460.960 kb on + strand at 460.965 kb on + strand at 460.981 kb on + strand at 460.982 kb on - strand at 460.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 457,443 - GFF3597 0.25 -3.1 457,487 + GFF3597 0.29 -0.0 457,488 - GFF3597 0.29 +0.1 457,488 - GFF3597 0.29 +0.3 457,538 - GFF3597 0.33 -0.5 457,681 - GFF3597 0.44 -0.5 457,683 - GFF3597 0.45 -0.2 457,683 - GFF3597 0.45 +1.2 457,691 - GFF3597 0.45 +0.4 457,714 + GFF3597 0.47 +1.6 457,714 + GFF3597 0.47 -0.9 457,715 - GFF3597 0.47 +0.6 457,756 - GFF3597 0.51 +0.7 457,844 + GFF3597 0.58 -0.1 457,847 + GFF3597 0.58 +1.1 458,055 - GFF3597 0.75 -2.1 458,082 - GFF3597 0.77 +0.8 458,089 + GFF3597 0.77 -1.0 458,090 - GFF3597 0.77 +0.2 458,133 + GFF3597 0.81 +2.5 458,133 + GFF3597 0.81 +0.5 458,133 + GFF3597 0.81 -0.8 458,134 - GFF3597 0.81 -0.7 458,152 + GFF3597 0.82 +0.5 458,153 - GFF3597 0.83 +0.1 458,192 - GFF3597 0.86 -0.2 458,306 + -1.6 458,306 + +0.3 458,306 + +2.9 458,307 - -0.4 458,307 - +0.5 458,307 - -0.6 458,344 + -0.2 458,345 - +0.1 458,345 - -0.9 458,345 - +0.2 458,346 + -2.3 458,346 + +0.5 458,346 + +0.9 458,346 + +1.0 458,346 + -0.1 458,346 + -0.0 458,346 + +2.6 458,346 + -0.4 458,346 + +0.5 458,347 - +1.1 458,347 - +0.2 458,347 - -0.3 458,347 - +0.8 460,177 - -0.6 460,428 + GFF3599 0.47 +1.3 460,428 + GFF3599 0.47 +0.6 460,428 + GFF3599 0.47 -0.4 460,429 - GFF3599 0.48 -0.9 460,429 - GFF3599 0.48 -0.9 460,429 - GFF3599 0.48 +0.2 460,521 + GFF3599 0.67 +0.5 460,521 + GFF3599 0.67 -0.2 460,522 - GFF3599 0.67 -0.8 460,522 - GFF3599 0.67 -0.9 460,522 - GFF3599 0.67 -0.9 460,960 + -0.4 460,965 + -1.9 460,981 + -0.1 460,982 - +0.3 460,982 - +0.4
Or see this region's nucleotide sequence