Strain Fitness in Xanthobacter sp. DMC5 around GFF3582

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3581 and GFF3582 overlap by 1 nucleotidesGFF3582 and GFF3583 are separated by 156 nucleotidesGFF3583 and GFF3584 are separated by 11 nucleotides GFF3581 - Phosphoribosylamine--glycine ligase, at 444,101 to 445,366 GFF3581 GFF3582 - hypothetical protein, at 445,366 to 445,794 GFF3582 GFF3583 - hypothetical protein, at 445,951 to 446,040 GFF3583 GFF3584 - putative oxidoreductase YjmC, at 446,052 to 447,137 GFF3584 Position (kb) 445 446Strain fitness (log2 ratio) -1 0 1 2at 445.630 kb on + strand, within GFF3582at 446.192 kb on + strand, within GFF3584at 446.225 kb on + strand, within GFF3584at 446.225 kb on + strand, within GFF3584at 446.558 kb on - strand, within GFF3584

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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445,630 + GFF3582 0.62 -0.9
446,192 + GFF3584 0.13 -0.1
446,225 + GFF3584 0.16 +1.9
446,225 + GFF3584 0.16 +0.1
446,558 - GFF3584 0.47 -0.8

Or see this region's nucleotide sequence