Strain Fitness in Xanthobacter sp. DMC5 around GFF3578

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3576 and GFF3577 are separated by 28 nucleotidesGFF3577 and GFF3578 are separated by 77 nucleotidesGFF3578 and GFF3579 are separated by 191 nucleotidesGFF3579 and GFF3580 are separated by 75 nucleotides GFF3576 - DNA-3-methyladenine glycosylase 1, at 439,069 to 439,680 GFF3576 GFF3577 - tRNA-modifying protein YgfZ, at 439,709 to 440,587 GFF3577 GFF3578 - Allantoinase, at 440,665 to 442,005 GFF3578 GFF3579 - hypothetical protein, at 442,197 to 442,421 GFF3579 GFF3580 - Exodeoxyribonuclease 7 large subunit, at 442,497 to 443,948 GFF3580 Position (kb) 440 441 442 443Strain fitness (log2 ratio) -2 -1 0 1at 442.252 kb on + strand, within GFF3579at 442.279 kb on + strand, within GFF3579at 442.369 kb on + strand, within GFF3579at 442.370 kb on - strand, within GFF3579

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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442,252 + GFF3579 0.24 -1.7
442,279 + GFF3579 0.36 -1.8
442,369 + GFF3579 0.76 -1.0
442,370 - GFF3579 0.77 +1.3

Or see this region's nucleotide sequence