Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3563 and GFF3564 are separated by 4 nucleotides GFF3564 and GFF3565 are separated by 74 nucleotides GFF3565 and GFF3566 are separated by 136 nucleotides GFF3566 and GFF3567 are separated by 106 nucleotides
GFF3563 - hypothetical protein, at 422,515 to 423,939
GFF3563
GFF3564 - hypothetical protein, at 423,944 to 424,318
GFF3564
GFF3565 - hypothetical protein, at 424,393 to 424,626
GFF3565
GFF3566 - ATP-dependent DNA helicase PcrA, at 424,763 to 427,177
GFF3566
GFF3567 - hypothetical protein, at 427,284 to 428,558
GFF3567
Position (kb) 424
425
426
427
428 Strain fitness (log2 ratio) -1
0
1 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.241 kb on + strand, within GFF3564 at 424.241 kb on + strand, within GFF3564 at 424.241 kb on + strand, within GFF3564 at 424.242 kb on - strand, within GFF3564 at 424.773 kb on + strand at 424.847 kb on + strand at 426.803 kb on + strand, within GFF3566 at 426.851 kb on + strand, within GFF3566 at 426.851 kb on + strand, within GFF3566 at 426.851 kb on + strand, within GFF3566 at 426.852 kb on - strand, within GFF3566 at 426.852 kb on - strand, within GFF3566 at 427.254 kb on - strand at 427.440 kb on + strand, within GFF3567 at 427.440 kb on + strand, within GFF3567 at 427.444 kb on - strand, within GFF3567 at 427.444 kb on - strand, within GFF3567 at 427.566 kb on + strand, within GFF3567 at 427.566 kb on + strand, within GFF3567 at 427.566 kb on + strand, within GFF3567 at 427.566 kb on + strand, within GFF3567 at 427.567 kb on - strand, within GFF3567 at 427.567 kb on - strand, within GFF3567 at 427.567 kb on - strand, within GFF3567 at 427.743 kb on + strand, within GFF3567 at 427.744 kb on - strand, within GFF3567 at 427.920 kb on + strand, within GFF3567 at 427.920 kb on + strand, within GFF3567 at 427.921 kb on - strand, within GFF3567 at 427.942 kb on - strand, within GFF3567 at 427.942 kb on - strand, within GFF3567 at 428.014 kb on - strand, within GFF3567 at 428.025 kb on + strand, within GFF3567 at 428.026 kb on - strand, within GFF3567 at 428.173 kb on - strand, within GFF3567
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 424,089 - GFF3564 0.39 -0.2 424,089 - GFF3564 0.39 -1.3 424,089 - GFF3564 0.39 +0.8 424,089 - GFF3564 0.39 -0.8 424,089 - GFF3564 0.39 -1.1 424,089 - GFF3564 0.39 -0.3 424,241 + GFF3564 0.79 -1.0 424,241 + GFF3564 0.79 -1.0 424,241 + GFF3564 0.79 -0.6 424,242 - GFF3564 0.79 -1.7 424,773 + +0.3 424,847 + -0.0 426,803 + GFF3566 0.84 -0.6 426,851 + GFF3566 0.86 +0.1 426,851 + GFF3566 0.86 -0.7 426,851 + GFF3566 0.86 -0.9 426,852 - GFF3566 0.87 +0.2 426,852 - GFF3566 0.87 +1.0 427,254 - -0.7 427,440 + GFF3567 0.12 -0.3 427,440 + GFF3567 0.12 -0.2 427,444 - GFF3567 0.13 -0.7 427,444 - GFF3567 0.13 -0.4 427,566 + GFF3567 0.22 +0.1 427,566 + GFF3567 0.22 +0.6 427,566 + GFF3567 0.22 -0.4 427,566 + GFF3567 0.22 -1.4 427,567 - GFF3567 0.22 +0.6 427,567 - GFF3567 0.22 +0.4 427,567 - GFF3567 0.22 +0.7 427,743 + GFF3567 0.36 +0.2 427,744 - GFF3567 0.36 +0.8 427,920 + GFF3567 0.50 -0.7 427,920 + GFF3567 0.50 -0.4 427,921 - GFF3567 0.50 +0.3 427,942 - GFF3567 0.52 +0.1 427,942 - GFF3567 0.52 -0.9 428,014 - GFF3567 0.57 -0.0 428,025 + GFF3567 0.58 +0.3 428,026 - GFF3567 0.58 -0.4 428,173 - GFF3567 0.70 +0.3
Or see this region's nucleotide sequence