Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3561 and GFF3562 are separated by 163 nucleotides GFF3562 and GFF3563 are separated by 85 nucleotides GFF3563 and GFF3564 are separated by 4 nucleotides GFF3564 and GFF3565 are separated by 74 nucleotides GFF3565 and GFF3566 are separated by 136 nucleotides
GFF3561 - hypothetical protein, at 420,104 to 421,963
GFF3561
GFF3562 - hypothetical protein, at 422,127 to 422,429
GFF3562
GFF3563 - hypothetical protein, at 422,515 to 423,939
GFF3563
GFF3564 - hypothetical protein, at 423,944 to 424,318
GFF3564
GFF3565 - hypothetical protein, at 424,393 to 424,626
GFF3565
GFF3566 - ATP-dependent DNA helicase PcrA, at 424,763 to 427,177
GFF3566
Position (kb) 422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 421.851 kb on + strand at 421.851 kb on + strand at 421.851 kb on + strand at 421.851 kb on + strand at 421.852 kb on - strand at 421.852 kb on - strand at 421.852 kb on - strand at 421.852 kb on - strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.130 kb on + strand at 422.131 kb on - strand at 422.131 kb on - strand at 422.131 kb on - strand at 422.131 kb on - strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.136 kb on + strand at 422.137 kb on - strand at 422.137 kb on - strand at 422.235 kb on + strand, within GFF3562 at 422.436 kb on + strand at 422.534 kb on - strand at 422.534 kb on - strand at 422.632 kb on + strand at 422.984 kb on + strand, within GFF3563 at 422.989 kb on + strand, within GFF3563 at 422.990 kb on - strand, within GFF3563 at 422.990 kb on - strand, within GFF3563 at 423.307 kb on + strand, within GFF3563 at 423.307 kb on + strand, within GFF3563 at 423.307 kb on + strand, within GFF3563 at 423.308 kb on - strand, within GFF3563 at 423.308 kb on - strand, within GFF3563 at 423.525 kb on - strand, within GFF3563 at 423.610 kb on + strand, within GFF3563 at 423.610 kb on + strand, within GFF3563 at 423.610 kb on + strand, within GFF3563 at 423.610 kb on + strand, within GFF3563 at 423.610 kb on + strand, within GFF3563 at 423.610 kb on + strand, within GFF3563 at 423.610 kb on + strand, within GFF3563 at 423.610 kb on + strand, within GFF3563 at 423.611 kb on - strand, within GFF3563 at 423.611 kb on - strand, within GFF3563 at 423.611 kb on - strand, within GFF3563 at 423.611 kb on - strand, within GFF3563 at 423.611 kb on - strand, within GFF3563 at 423.611 kb on - strand, within GFF3563 at 423.611 kb on - strand, within GFF3563 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.089 kb on - strand, within GFF3564 at 424.241 kb on + strand, within GFF3564 at 424.241 kb on + strand, within GFF3564 at 424.241 kb on + strand, within GFF3564 at 424.242 kb on - strand, within GFF3564 at 424.773 kb on + strand at 424.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 421,851 + -0.7 421,851 + -0.5 421,851 + +0.4 421,851 + -0.1 421,852 - -0.4 421,852 - -1.2 421,852 - -0.1 421,852 - -0.1 422,130 + -3.0 422,130 + +1.0 422,130 + +0.4 422,130 + +0.7 422,130 + +0.3 422,130 + -0.0 422,130 + +0.1 422,130 + +0.7 422,131 - +0.2 422,131 - -0.0 422,131 - +1.0 422,131 - -0.3 422,136 + -0.5 422,136 + +0.9 422,136 + +0.3 422,136 + -0.6 422,136 + +0.0 422,136 + -0.9 422,137 - +0.5 422,137 - +1.2 422,235 + GFF3562 0.36 +0.3 422,436 + -1.5 422,534 - +1.7 422,534 - -0.0 422,632 + -0.9 422,984 + GFF3563 0.33 -0.7 422,989 + GFF3563 0.33 +0.2 422,990 - GFF3563 0.33 -0.2 422,990 - GFF3563 0.33 -0.6 423,307 + GFF3563 0.56 +0.2 423,307 + GFF3563 0.56 -0.3 423,307 + GFF3563 0.56 +0.9 423,308 - GFF3563 0.56 -1.2 423,308 - GFF3563 0.56 +0.4 423,525 - GFF3563 0.71 -0.3 423,610 + GFF3563 0.77 +0.7 423,610 + GFF3563 0.77 -0.5 423,610 + GFF3563 0.77 -2.2 423,610 + GFF3563 0.77 -0.3 423,610 + GFF3563 0.77 -0.6 423,610 + GFF3563 0.77 -0.2 423,610 + GFF3563 0.77 +1.3 423,610 + GFF3563 0.77 +0.4 423,611 - GFF3563 0.77 -0.4 423,611 - GFF3563 0.77 -1.2 423,611 - GFF3563 0.77 +1.0 423,611 - GFF3563 0.77 -0.3 423,611 - GFF3563 0.77 -0.4 423,611 - GFF3563 0.77 +0.5 423,611 - GFF3563 0.77 +0.1 424,089 - GFF3564 0.39 -0.2 424,089 - GFF3564 0.39 -1.3 424,089 - GFF3564 0.39 +0.8 424,089 - GFF3564 0.39 -0.8 424,089 - GFF3564 0.39 -1.1 424,089 - GFF3564 0.39 -0.3 424,241 + GFF3564 0.79 -1.0 424,241 + GFF3564 0.79 -1.0 424,241 + GFF3564 0.79 -0.6 424,242 - GFF3564 0.79 -1.7 424,773 + +0.3 424,847 + -0.0
Or see this region's nucleotide sequence