Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF354 and GFF355 are separated by 1 nucleotides GFF355 and GFF356 are separated by 4 nucleotides GFF356 and GFF357 overlap by 4 nucleotides
GFF354 - Bicarbonate transport ATP-binding protein CmpD, at 362,984 to 363,766
GFF354
GFF355 - Riboflavin transport system permease protein RibX, at 363,768 to 364,544
GFF355
GFF356 - hypothetical protein, at 364,549 to 365,964
GFF356
GFF357 - putative xanthine dehydrogenase subunit D, at 365,961 to 368,255
GFF357
Position (kb) 364
365
366 Strain fitness (log2 ratio) -2
-1
0
1
2 at 363.645 kb on + strand, within GFF354 at 363.646 kb on - strand, within GFF354 at 363.866 kb on + strand, within GFF355 at 363.866 kb on + strand, within GFF355 at 363.866 kb on + strand, within GFF355 at 363.875 kb on - strand, within GFF355 at 363.911 kb on - strand, within GFF355 at 364.035 kb on + strand, within GFF355 at 364.035 kb on + strand, within GFF355 at 364.036 kb on - strand, within GFF355 at 364.048 kb on - strand, within GFF355 at 364.072 kb on - strand, within GFF355 at 364.257 kb on - strand, within GFF355 at 364.293 kb on + strand, within GFF355 at 364.293 kb on + strand, within GFF355 at 364.294 kb on - strand, within GFF355 at 364.470 kb on + strand at 364.470 kb on + strand at 364.470 kb on + strand at 364.470 kb on + strand at 364.470 kb on + strand at 364.471 kb on - strand at 365.009 kb on + strand, within GFF356 at 365.010 kb on - strand, within GFF356 at 365.010 kb on - strand, within GFF356 at 365.208 kb on + strand, within GFF356 at 365.208 kb on + strand, within GFF356 at 365.209 kb on - strand, within GFF356 at 365.314 kb on + strand, within GFF356 at 365.315 kb on - strand, within GFF356 at 365.315 kb on - strand, within GFF356 at 365.442 kb on - strand, within GFF356 at 365.960 kb on + strand at 365.961 kb on - strand at 365.961 kb on - strand at 366.030 kb on + strand at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.240 kb on + strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.241 kb on - strand, within GFF357 at 366.322 kb on - strand, within GFF357 at 366.322 kb on - strand, within GFF357 at 366.361 kb on - strand, within GFF357 at 366.361 kb on - strand, within GFF357 at 366.540 kb on + strand, within GFF357 at 366.541 kb on - strand, within GFF357 at 366.918 kb on + strand, within GFF357 at 366.919 kb on - strand, within GFF357 at 366.919 kb on - strand, within GFF357 at 366.919 kb on - strand, within GFF357
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 363,645 + GFF354 0.84 -1.2 363,646 - GFF354 0.85 +0.3 363,866 + GFF355 0.13 +1.4 363,866 + GFF355 0.13 +0.6 363,866 + GFF355 0.13 +0.6 363,875 - GFF355 0.14 -1.0 363,911 - GFF355 0.18 -0.1 364,035 + GFF355 0.34 +0.5 364,035 + GFF355 0.34 -2.0 364,036 - GFF355 0.34 -2.3 364,048 - GFF355 0.36 -1.2 364,072 - GFF355 0.39 -0.0 364,257 - GFF355 0.63 +0.2 364,293 + GFF355 0.68 -2.6 364,293 + GFF355 0.68 +0.3 364,294 - GFF355 0.68 +0.3 364,470 + -0.1 364,470 + +0.0 364,470 + -0.3 364,470 + +0.4 364,470 + -0.3 364,471 - +0.5 365,009 + GFF356 0.32 -1.1 365,010 - GFF356 0.33 +0.6 365,010 - GFF356 0.33 -0.1 365,208 + GFF356 0.47 -0.1 365,208 + GFF356 0.47 -0.9 365,209 - GFF356 0.47 +1.6 365,314 + GFF356 0.54 +0.5 365,315 - GFF356 0.54 +0.1 365,315 - GFF356 0.54 +2.5 365,442 - GFF356 0.63 -0.8 365,960 + -0.9 365,961 - -1.2 365,961 - +0.5 366,030 + +0.2 366,240 + GFF357 0.12 +2.2 366,240 + GFF357 0.12 +0.4 366,240 + GFF357 0.12 -1.2 366,240 + GFF357 0.12 +0.9 366,240 + GFF357 0.12 -0.4 366,240 + GFF357 0.12 -0.6 366,240 + GFF357 0.12 -0.8 366,240 + GFF357 0.12 -0.4 366,241 - GFF357 0.12 +0.1 366,241 - GFF357 0.12 +0.1 366,241 - GFF357 0.12 +0.4 366,241 - GFF357 0.12 -2.2 366,241 - GFF357 0.12 +1.0 366,322 - GFF357 0.16 +0.2 366,322 - GFF357 0.16 +0.7 366,361 - GFF357 0.17 +2.5 366,361 - GFF357 0.17 -0.0 366,540 + GFF357 0.25 -0.0 366,541 - GFF357 0.25 -0.9 366,918 + GFF357 0.42 -0.2 366,919 - GFF357 0.42 -0.2 366,919 - GFF357 0.42 +0.5 366,919 - GFF357 0.42 -1.6
Or see this region's nucleotide sequence