Strain Fitness in Xanthobacter sp. DMC5 around GFF3555

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3554 and GFF3555 are separated by 120 nucleotidesGFF3555 and GFF3556 are separated by 54 nucleotidesGFF3556 and GFF3557 are separated by 1 nucleotides GFF3554 - High-affinity branched-chain amino acid transport system permease protein LivH, at 409,805 to 410,686 GFF3554 GFF3555 - hypothetical protein, at 410,807 to 412,015 GFF3555 GFF3556 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 412,070 to 412,783 GFF3556 GFF3557 - Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA, at 412,785 to 413,555 GFF3557 Position (kb) 410 411 412 413Strain fitness (log2 ratio) -1 0 1 2at 409.893 kb on + strandat 409.894 kb on - strand, within GFF3554at 409.895 kb on + strand, within GFF3554at 410.034 kb on + strand, within GFF3554at 410.035 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.248 kb on - strand, within GFF3554at 410.248 kb on - strand, within GFF3554at 410.301 kb on + strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.322 kb on + strand, within GFF3554at 410.383 kb on - strand, within GFF3554at 410.383 kb on - strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.402 kb on + strand, within GFF3554at 410.497 kb on - strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.536 kb on - strand, within GFF3554at 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.611 kb on - strandat 410.623 kb on + strandat 410.749 kb on - strandat 410.889 kb on + strandat 410.889 kb on + strandat 410.889 kb on + strandat 410.889 kb on + strandat 410.890 kb on - strandat 410.890 kb on - strandat 410.890 kb on - strandat 410.890 kb on - strandat 410.890 kb on - strandat 410.892 kb on + strandat 410.892 kb on + strandat 410.892 kb on + strandat 410.893 kb on - strandat 410.893 kb on - strandat 410.893 kb on - strandat 410.934 kb on + strand, within GFF3555at 410.934 kb on + strand, within GFF3555at 410.934 kb on + strand, within GFF3555at 410.935 kb on - strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 411.078 kb on + strand, within GFF3555at 411.078 kb on + strand, within GFF3555at 411.078 kb on + strand, within GFF3555at 411.079 kb on - strand, within GFF3555at 411.079 kb on - strand, within GFF3555at 411.096 kb on + strand, within GFF3555at 411.097 kb on - strand, within GFF3555at 411.196 kb on + strand, within GFF3555at 411.300 kb on + strand, within GFF3555at 411.300 kb on + strand, within GFF3555at 411.301 kb on - strand, within GFF3555at 411.505 kb on - strand, within GFF3555at 411.589 kb on - strand, within GFF3555at 411.589 kb on - strand, within GFF3555at 411.753 kb on + strand, within GFF3555at 411.753 kb on + strand, within GFF3555at 411.903 kb on + strandat 411.903 kb on + strandat 411.998 kb on + strandat 411.999 kb on - strandat 411.999 kb on - strandat 412.126 kb on - strandat 412.161 kb on + strand, within GFF3556at 412.161 kb on + strand, within GFF3556at 412.161 kb on + strand, within GFF3556at 412.162 kb on - strand, within GFF3556at 412.162 kb on - strand, within GFF3556at 412.584 kb on + strand, within GFF3556at 412.585 kb on - strand, within GFF3556at 412.731 kb on + strandat 412.732 kb on - strandat 412.732 kb on - strandat 412.808 kb on + strandat 412.809 kb on - strandat 412.810 kb on + strandat 412.810 kb on + strandat 412.810 kb on + strandat 412.811 kb on - strandat 412.811 kb on - strandat 412.811 kb on - strandat 412.811 kb on - strandat 412.811 kb on - strandat 412.849 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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409,893 + -0.3
409,894 - GFF3554 0.10 +0.0
409,895 + GFF3554 0.10 +0.1
410,034 + GFF3554 0.26 +0.3
410,035 - GFF3554 0.26 -1.4
410,089 - GFF3554 0.32 -1.6
410,089 - GFF3554 0.32 +0.2
410,089 - GFF3554 0.32 -0.0
410,089 - GFF3554 0.32 -0.7
410,166 + GFF3554 0.41 +0.5
410,166 + GFF3554 0.41 +0.3
410,166 + GFF3554 0.41 -0.6
410,166 + GFF3554 0.41 +1.3
410,166 + GFF3554 0.41 -0.2
410,248 - GFF3554 0.50 +2.0
410,248 - GFF3554 0.50 -1.3
410,301 + GFF3554 0.56 +0.3
410,302 - GFF3554 0.56 +0.4
410,302 - GFF3554 0.56 +0.5
410,302 - GFF3554 0.56 -0.8
410,322 + GFF3554 0.59 +0.1
410,383 - GFF3554 0.66 +1.3
410,383 - GFF3554 0.66 -0.0
410,400 + GFF3554 0.67 +0.5
410,400 + GFF3554 0.67 -0.1
410,400 + GFF3554 0.67 +0.6
410,400 + GFF3554 0.67 +1.4
410,400 + GFF3554 0.67 +0.2
410,400 + GFF3554 0.67 -1.0
410,400 + GFF3554 0.67 +0.4
410,400 + GFF3554 0.67 +0.1
410,400 + GFF3554 0.67 +1.3
410,400 + GFF3554 0.67 -1.1
410,400 + GFF3554 0.67 +0.4
410,401 - GFF3554 0.68 -0.7
410,401 - GFF3554 0.68 -1.7
410,401 - GFF3554 0.68 -0.6
410,401 - GFF3554 0.68 +0.0
410,401 - GFF3554 0.68 +0.0
410,402 + GFF3554 0.68 +0.3
410,497 - GFF3554 0.78 -0.0
410,535 + GFF3554 0.83 +1.1
410,535 + GFF3554 0.83 -1.2
410,535 + GFF3554 0.83 -0.3
410,535 + GFF3554 0.83 -1.0
410,536 - GFF3554 0.83 +0.7
410,610 + +0.0
410,610 + -1.0
410,610 + +0.3
410,610 + -1.2
410,610 + +0.5
410,611 - +0.9
410,623 + -0.4
410,749 - -0.6
410,889 + -1.0
410,889 + +0.9
410,889 + +0.3
410,889 + +0.3
410,890 - +0.3
410,890 - +0.1
410,890 - +0.2
410,890 - -0.4
410,890 - -0.4
410,892 + -0.1
410,892 + +0.1
410,892 + +0.2
410,893 - -1.1
410,893 - -0.9
410,893 - +0.3
410,934 + GFF3555 0.11 +0.9
410,934 + GFF3555 0.11 -1.3
410,934 + GFF3555 0.11 +0.1
410,935 - GFF3555 0.11 +0.7
410,940 + GFF3555 0.11 -1.2
410,940 + GFF3555 0.11 -0.0
410,940 + GFF3555 0.11 +0.2
410,940 + GFF3555 0.11 +0.3
410,940 + GFF3555 0.11 +0.2
410,940 + GFF3555 0.11 -0.7
410,940 + GFF3555 0.11 -0.0
410,940 + GFF3555 0.11 +0.4
410,940 + GFF3555 0.11 +0.8
410,941 - GFF3555 0.11 +0.4
410,941 - GFF3555 0.11 +0.6
410,941 - GFF3555 0.11 -1.0
410,941 - GFF3555 0.11 -0.6
410,941 - GFF3555 0.11 -0.4
410,941 - GFF3555 0.11 +0.3
410,941 - GFF3555 0.11 +0.8
410,941 - GFF3555 0.11 -1.3
410,941 - GFF3555 0.11 +0.7
411,078 + GFF3555 0.22 +0.1
411,078 + GFF3555 0.22 +0.6
411,078 + GFF3555 0.22 -0.7
411,079 - GFF3555 0.22 -0.8
411,079 - GFF3555 0.22 -0.5
411,096 + GFF3555 0.24 +0.0
411,097 - GFF3555 0.24 -0.2
411,196 + GFF3555 0.32 +0.1
411,300 + GFF3555 0.41 -1.2
411,300 + GFF3555 0.41 +1.0
411,301 - GFF3555 0.41 -1.6
411,505 - GFF3555 0.58 +0.2
411,589 - GFF3555 0.65 -0.3
411,589 - GFF3555 0.65 +0.3
411,753 + GFF3555 0.78 +1.3
411,753 + GFF3555 0.78 +0.9
411,903 + +0.4
411,903 + +1.1
411,998 + +0.4
411,999 - -0.6
411,999 - +0.5
412,126 - -0.0
412,161 + GFF3556 0.13 +1.3
412,161 + GFF3556 0.13 -0.0
412,161 + GFF3556 0.13 +0.4
412,162 - GFF3556 0.13 -0.1
412,162 - GFF3556 0.13 -0.4
412,584 + GFF3556 0.72 -0.0
412,585 - GFF3556 0.72 +0.1
412,731 + -0.6
412,732 - +0.4
412,732 - +1.2
412,808 + -0.4
412,809 - +0.3
412,810 + -0.7
412,810 + +0.7
412,810 + +0.0
412,811 - +0.6
412,811 - +1.3
412,811 - -0.2
412,811 - -0.0
412,811 - -1.0
412,849 + +0.3

Or see this region's nucleotide sequence