Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3545 and GFF3546 are separated by 282 nucleotides GFF3546 and GFF3547 are separated by 34 nucleotides GFF3547 and GFF3548 are separated by 215 nucleotides GFF3548 and GFF3549 are separated by 187 nucleotides
GFF3545 - hypothetical protein, at 401,046 to 401,900
GFF3545
GFF3546 - hypothetical protein, at 402,183 to 402,641
GFF3546
GFF3547 - Inosine-5'-monophosphate dehydrogenase, at 402,676 to 404,202
GFF3547
GFF3548 - hypothetical protein, at 404,418 to 404,942
GFF3548
GFF3549 - hypothetical protein, at 405,130 to 405,696
GFF3549
Position (kb) 402
403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 401.725 kb on + strand, within GFF3545 at 401.725 kb on + strand, within GFF3545 at 401.726 kb on - strand, within GFF3545 at 401.726 kb on - strand, within GFF3545 at 401.734 kb on + strand, within GFF3545 at 401.735 kb on - strand, within GFF3545 at 401.735 kb on - strand, within GFF3545 at 401.804 kb on + strand, within GFF3545 at 401.804 kb on + strand, within GFF3545 at 401.805 kb on - strand, within GFF3545 at 401.994 kb on + strand at 402.020 kb on + strand at 402.021 kb on - strand at 402.021 kb on - strand at 402.034 kb on + strand at 402.034 kb on + strand at 402.035 kb on - strand at 402.035 kb on - strand at 402.035 kb on - strand at 402.035 kb on - strand at 402.138 kb on - strand at 402.138 kb on - strand at 402.138 kb on - strand at 402.194 kb on + strand at 402.196 kb on + strand at 402.197 kb on - strand at 402.325 kb on - strand, within GFF3546 at 402.325 kb on - strand, within GFF3546 at 402.423 kb on + strand, within GFF3546 at 402.423 kb on + strand, within GFF3546 at 402.423 kb on + strand, within GFF3546 at 402.424 kb on - strand, within GFF3546 at 402.424 kb on - strand, within GFF3546 at 402.424 kb on - strand, within GFF3546 at 402.424 kb on - strand, within GFF3546 at 402.465 kb on + strand, within GFF3546 at 402.465 kb on + strand, within GFF3546 at 402.465 kb on + strand, within GFF3546 at 402.465 kb on + strand, within GFF3546 at 402.466 kb on - strand, within GFF3546 at 402.466 kb on - strand, within GFF3546 at 402.466 kb on - strand, within GFF3546 at 402.466 kb on - strand, within GFF3546 at 402.469 kb on - strand, within GFF3546 at 402.469 kb on - strand, within GFF3546 at 402.484 kb on - strand, within GFF3546 at 402.660 kb on + strand at 402.660 kb on + strand at 402.661 kb on - strand at 404.309 kb on - strand at 404.456 kb on - strand at 404.474 kb on - strand, within GFF3548 at 404.566 kb on + strand, within GFF3548 at 404.609 kb on - strand, within GFF3548 at 404.611 kb on + strand, within GFF3548 at 404.612 kb on - strand, within GFF3548 at 404.626 kb on + strand, within GFF3548 at 404.636 kb on - strand, within GFF3548 at 404.674 kb on + strand, within GFF3548 at 404.801 kb on + strand, within GFF3548 at 404.801 kb on + strand, within GFF3548 at 404.802 kb on - strand, within GFF3548 at 404.935 kb on - strand at 404.935 kb on - strand at 404.995 kb on + strand at 404.995 kb on + strand at 404.996 kb on - strand at 404.996 kb on - strand at 404.996 kb on - strand at 405.064 kb on - strand at 405.072 kb on + strand at 405.072 kb on + strand at 405.072 kb on + strand at 405.072 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 401,725 + GFF3545 0.79 -0.1 401,725 + GFF3545 0.79 +0.5 401,726 - GFF3545 0.80 -1.3 401,726 - GFF3545 0.80 -1.8 401,734 + GFF3545 0.80 +0.2 401,735 - GFF3545 0.81 +0.2 401,735 - GFF3545 0.81 +1.6 401,804 + GFF3545 0.89 +0.6 401,804 + GFF3545 0.89 +1.1 401,805 - GFF3545 0.89 +0.5 401,994 + -1.7 402,020 + -0.2 402,021 - -0.5 402,021 - -0.5 402,034 + -0.3 402,034 + +0.0 402,035 - +0.6 402,035 - +0.2 402,035 - -0.2 402,035 - +0.1 402,138 - +1.7 402,138 - +0.7 402,138 - -0.5 402,194 + -0.4 402,196 + +0.0 402,197 - +0.6 402,325 - GFF3546 0.31 +0.4 402,325 - GFF3546 0.31 -0.7 402,423 + GFF3546 0.52 -1.2 402,423 + GFF3546 0.52 +0.8 402,423 + GFF3546 0.52 +0.3 402,424 - GFF3546 0.53 +0.1 402,424 - GFF3546 0.53 -3.1 402,424 - GFF3546 0.53 -1.7 402,424 - GFF3546 0.53 +0.5 402,465 + GFF3546 0.61 +0.7 402,465 + GFF3546 0.61 +0.1 402,465 + GFF3546 0.61 +0.2 402,465 + GFF3546 0.61 -0.3 402,466 - GFF3546 0.62 -0.5 402,466 - GFF3546 0.62 +1.2 402,466 - GFF3546 0.62 -0.9 402,466 - GFF3546 0.62 +0.6 402,469 - GFF3546 0.62 +0.8 402,469 - GFF3546 0.62 -0.7 402,484 - GFF3546 0.66 -0.9 402,660 + +0.1 402,660 + -0.2 402,661 - -1.0 404,309 - +0.6 404,456 - +0.2 404,474 - GFF3548 0.11 -0.8 404,566 + GFF3548 0.28 +0.3 404,609 - GFF3548 0.36 -0.7 404,611 + GFF3548 0.37 -1.4 404,612 - GFF3548 0.37 +0.8 404,626 + GFF3548 0.40 -0.5 404,636 - GFF3548 0.42 -0.1 404,674 + GFF3548 0.49 +0.8 404,801 + GFF3548 0.73 +0.1 404,801 + GFF3548 0.73 +0.5 404,802 - GFF3548 0.73 -0.9 404,935 - -0.5 404,935 - -0.4 404,995 + -0.3 404,995 + +1.0 404,996 - -1.4 404,996 - +0.8 404,996 - +1.9 405,064 - -0.9 405,072 + -0.4 405,072 + -0.0 405,072 + -0.8 405,072 + +0.5
Or see this region's nucleotide sequence