Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF353 and GFF354 are separated by 203 nucleotides GFF354 and GFF355 are separated by 1 nucleotides GFF355 and GFF356 are separated by 4 nucleotides
GFF353 - Riboflavin-binding protein RibY, at 361,773 to 362,780
GFF353
GFF354 - Bicarbonate transport ATP-binding protein CmpD, at 362,984 to 363,766
GFF354
GFF355 - Riboflavin transport system permease protein RibX, at 363,768 to 364,544
GFF355
GFF356 - hypothetical protein, at 364,549 to 365,964
GFF356
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1 at 362.001 kb on + strand, within GFF353 at 362.089 kb on - strand, within GFF353 at 362.552 kb on + strand, within GFF353 at 362.701 kb on - strand at 362.701 kb on - strand at 362.932 kb on + strand at 362.932 kb on + strand at 362.932 kb on + strand at 362.933 kb on - strand at 363.014 kb on + strand at 363.014 kb on + strand at 363.015 kb on - strand at 363.015 kb on - strand at 363.645 kb on + strand, within GFF354 at 363.646 kb on - strand, within GFF354 at 363.866 kb on + strand, within GFF355 at 363.866 kb on + strand, within GFF355 at 363.866 kb on + strand, within GFF355 at 363.875 kb on - strand, within GFF355 at 363.911 kb on - strand, within GFF355 at 364.035 kb on + strand, within GFF355 at 364.035 kb on + strand, within GFF355 at 364.036 kb on - strand, within GFF355 at 364.048 kb on - strand, within GFF355 at 364.072 kb on - strand, within GFF355 at 364.257 kb on - strand, within GFF355 at 364.293 kb on + strand, within GFF355 at 364.293 kb on + strand, within GFF355 at 364.294 kb on - strand, within GFF355 at 364.470 kb on + strand at 364.470 kb on + strand at 364.470 kb on + strand at 364.470 kb on + strand at 364.470 kb on + strand at 364.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 362,001 + GFF353 0.23 +0.2 362,089 - GFF353 0.31 +1.7 362,552 + GFF353 0.77 +1.2 362,701 - -2.3 362,701 - +0.3 362,932 + +1.5 362,932 + +0.1 362,932 + +0.2 362,933 - -0.2 363,014 + +0.8 363,014 + +0.2 363,015 - +0.2 363,015 - +1.4 363,645 + GFF354 0.84 -1.2 363,646 - GFF354 0.85 +0.3 363,866 + GFF355 0.13 +1.4 363,866 + GFF355 0.13 +0.6 363,866 + GFF355 0.13 +0.6 363,875 - GFF355 0.14 -1.0 363,911 - GFF355 0.18 -0.1 364,035 + GFF355 0.34 +0.5 364,035 + GFF355 0.34 -2.0 364,036 - GFF355 0.34 -2.3 364,048 - GFF355 0.36 -1.2 364,072 - GFF355 0.39 -0.0 364,257 - GFF355 0.63 +0.2 364,293 + GFF355 0.68 -2.6 364,293 + GFF355 0.68 +0.3 364,294 - GFF355 0.68 +0.3 364,470 + -0.1 364,470 + +0.0 364,470 + -0.3 364,470 + +0.4 364,470 + -0.3 364,471 - +0.5
Or see this region's nucleotide sequence