Strain Fitness in Xanthobacter sp. DMC5 around GFF3535

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3534 and GFF3535 are separated by 365 nucleotidesGFF3535 and GFF3536 are separated by 109 nucleotidesGFF3536 and GFF3537 are separated by 300 nucleotidesGFF3537 and GFF3538 are separated by 69 nucleotides GFF3534 - Endolytic murein transglycosylase, at 389,299 to 390,453 GFF3534 GFF3535 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 390,819 to 392,081 GFF3535 GFF3536 - Acyl carrier protein, at 392,191 to 392,427 GFF3536 GFF3537 - hypothetical protein, at 392,728 to 392,934 GFF3537 GFF3538 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 393,004 to 394,293 GFF3538 Position (kb) 390 391 392 393Strain fitness (log2 ratio) -2 -1 0 1 2at 389.906 kb on + strand, within GFF3534at 390.095 kb on + strand, within GFF3534at 390.096 kb on - strand, within GFF3534at 390.741 kb on - strandat 390.741 kb on - strandat 392.624 kb on - strandat 392.705 kb on + strandat 392.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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389,906 + GFF3534 0.53 +2.1
390,095 + GFF3534 0.69 +1.5
390,096 - GFF3534 0.69 -0.0
390,741 - -0.3
390,741 - -2.0
392,624 - -0.4
392,705 + +0.1
392,706 - -1.0

Or see this region's nucleotide sequence