Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3526 and GFF3527 are separated by 247 nucleotides GFF3527 and GFF3528 are separated by 47 nucleotides GFF3528 and GFF3529 are separated by 105 nucleotides
GFF3526 - NAD-dependent malic enzyme, at 376,848 to 379,127
GFF3526
GFF3527 - hypothetical protein, at 379,375 to 381,414
GFF3527
GFF3528 - hypothetical protein, at 381,462 to 381,905
GFF3528
GFF3529 - Aspartate--tRNA(Asp/Asn) ligase, at 382,011 to 383,786
GFF3529
Position (kb) 379
380
381
382 Strain fitness (log2 ratio) -2
-1
0
1 at 378.397 kb on + strand, within GFF3526 at 378.397 kb on + strand, within GFF3526 at 378.398 kb on - strand, within GFF3526 at 378.440 kb on - strand, within GFF3526 at 379.197 kb on - strand at 379.197 kb on - strand at 379.197 kb on - strand at 379.221 kb on - strand at 379.221 kb on - strand at 379.226 kb on - strand at 379.226 kb on - strand at 379.345 kb on - strand at 379.769 kb on - strand, within GFF3527 at 379.769 kb on - strand, within GFF3527 at 379.769 kb on - strand, within GFF3527 at 379.798 kb on + strand, within GFF3527 at 379.798 kb on + strand, within GFF3527 at 379.799 kb on - strand, within GFF3527 at 379.799 kb on - strand, within GFF3527 at 379.963 kb on + strand, within GFF3527 at 379.963 kb on + strand, within GFF3527 at 379.963 kb on + strand, within GFF3527 at 379.964 kb on - strand, within GFF3527 at 379.964 kb on - strand, within GFF3527 at 380.038 kb on + strand, within GFF3527 at 380.038 kb on + strand, within GFF3527 at 380.038 kb on + strand, within GFF3527 at 380.039 kb on - strand, within GFF3527 at 380.039 kb on - strand, within GFF3527 at 380.192 kb on - strand, within GFF3527 at 380.227 kb on + strand, within GFF3527 at 380.228 kb on - strand, within GFF3527 at 380.228 kb on - strand, within GFF3527 at 380.455 kb on + strand, within GFF3527 at 380.455 kb on + strand, within GFF3527 at 380.455 kb on + strand, within GFF3527 at 380.456 kb on - strand, within GFF3527 at 380.812 kb on + strand, within GFF3527 at 380.812 kb on + strand, within GFF3527 at 380.812 kb on + strand, within GFF3527 at 380.812 kb on + strand, within GFF3527 at 380.813 kb on - strand, within GFF3527 at 380.813 kb on - strand, within GFF3527 at 380.813 kb on - strand, within GFF3527 at 380.837 kb on + strand, within GFF3527 at 380.838 kb on - strand, within GFF3527 at 380.878 kb on + strand, within GFF3527 at 380.878 kb on + strand, within GFF3527 at 380.878 kb on + strand, within GFF3527 at 380.879 kb on - strand, within GFF3527 at 380.879 kb on - strand, within GFF3527 at 380.879 kb on - strand, within GFF3527 at 380.880 kb on + strand, within GFF3527 at 381.140 kb on - strand, within GFF3527 at 381.140 kb on - strand, within GFF3527 at 381.140 kb on - strand, within GFF3527 at 381.181 kb on + strand, within GFF3527 at 381.375 kb on - strand at 381.423 kb on - strand at 381.436 kb on + strand at 381.437 kb on - strand at 381.628 kb on + strand, within GFF3528 at 381.628 kb on + strand, within GFF3528 at 381.629 kb on - strand, within GFF3528 at 381.641 kb on - strand, within GFF3528 at 381.641 kb on - strand, within GFF3528 at 381.643 kb on + strand, within GFF3528 at 381.905 kb on + strand at 381.905 kb on + strand at 381.905 kb on + strand at 381.905 kb on + strand at 381.906 kb on - strand at 381.906 kb on - strand at 381.906 kb on - strand at 381.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 378,397 + GFF3526 0.68 +0.7 378,397 + GFF3526 0.68 +0.1 378,398 - GFF3526 0.68 -0.0 378,440 - GFF3526 0.70 +0.7 379,197 - +0.9 379,197 - -2.5 379,197 - -0.4 379,221 - -1.4 379,221 - +0.7 379,226 - +0.1 379,226 - +0.1 379,345 - -0.1 379,769 - GFF3527 0.19 -0.1 379,769 - GFF3527 0.19 +0.1 379,769 - GFF3527 0.19 -0.4 379,798 + GFF3527 0.21 -1.1 379,798 + GFF3527 0.21 +0.5 379,799 - GFF3527 0.21 +1.0 379,799 - GFF3527 0.21 +0.5 379,963 + GFF3527 0.29 -0.2 379,963 + GFF3527 0.29 +0.4 379,963 + GFF3527 0.29 +0.0 379,964 - GFF3527 0.29 -0.9 379,964 - GFF3527 0.29 +0.1 380,038 + GFF3527 0.33 -0.1 380,038 + GFF3527 0.33 +0.2 380,038 + GFF3527 0.33 +0.2 380,039 - GFF3527 0.33 -0.1 380,039 - GFF3527 0.33 -0.7 380,192 - GFF3527 0.40 -0.1 380,227 + GFF3527 0.42 -0.8 380,228 - GFF3527 0.42 -1.1 380,228 - GFF3527 0.42 +0.6 380,455 + GFF3527 0.53 -0.6 380,455 + GFF3527 0.53 +0.0 380,455 + GFF3527 0.53 +0.2 380,456 - GFF3527 0.53 -0.6 380,812 + GFF3527 0.70 +0.3 380,812 + GFF3527 0.70 +0.3 380,812 + GFF3527 0.70 +0.8 380,812 + GFF3527 0.70 +0.5 380,813 - GFF3527 0.70 -0.3 380,813 - GFF3527 0.70 -0.7 380,813 - GFF3527 0.70 -0.5 380,837 + GFF3527 0.72 +0.5 380,838 - GFF3527 0.72 -1.2 380,878 + GFF3527 0.74 -1.2 380,878 + GFF3527 0.74 -0.3 380,878 + GFF3527 0.74 +0.0 380,879 - GFF3527 0.74 +1.2 380,879 - GFF3527 0.74 +1.6 380,879 - GFF3527 0.74 -1.3 380,880 + GFF3527 0.74 -1.1 381,140 - GFF3527 0.87 +0.5 381,140 - GFF3527 0.87 +0.4 381,140 - GFF3527 0.87 -0.4 381,181 + GFF3527 0.89 +0.3 381,375 - -0.1 381,423 - -0.2 381,436 + -0.3 381,437 - -0.3 381,628 + GFF3528 0.37 -0.1 381,628 + GFF3528 0.37 -0.5 381,629 - GFF3528 0.38 -0.2 381,641 - GFF3528 0.40 -1.1 381,641 - GFF3528 0.40 -0.0 381,643 + GFF3528 0.41 -0.0 381,905 + -1.2 381,905 + +0.5 381,905 + -1.3 381,905 + +0.4 381,906 - -0.7 381,906 - -1.4 381,906 - -0.1 381,966 - -0.8
Or see this region's nucleotide sequence