Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3518 and GFF3519 are separated by 262 nucleotides GFF3519 and GFF3520 are separated by 150 nucleotides GFF3520 and GFF3521 are separated by 3 nucleotides
GFF3518 - hypothetical protein, at 369,344 to 370,507
GFF3518
GFF3519 - hypothetical protein, at 370,770 to 371,339
GFF3519
GFF3520 - hypothetical protein, at 371,490 to 371,765
GFF3520
GFF3521 - hypothetical protein, at 371,769 to 373,088
GFF3521
Position (kb) 370
371
372 Strain fitness (log2 ratio) -1
0
1 at 369.835 kb on - strand, within GFF3518 at 370.056 kb on + strand, within GFF3518 at 370.164 kb on + strand, within GFF3518 at 370.164 kb on + strand, within GFF3518 at 370.165 kb on - strand, within GFF3518 at 370.389 kb on + strand, within GFF3518 at 370.389 kb on + strand, within GFF3518 at 370.389 kb on + strand, within GFF3518 at 370.389 kb on + strand, within GFF3518 at 370.390 kb on - strand, within GFF3518 at 370.819 kb on + strand at 371.110 kb on - strand, within GFF3519 at 371.371 kb on - strand at 371.444 kb on + strand at 371.445 kb on - strand at 371.445 kb on - strand at 371.560 kb on - strand, within GFF3520 at 371.625 kb on + strand, within GFF3520 at 371.626 kb on - strand, within GFF3520 at 371.770 kb on + strand at 371.771 kb on - strand at 371.899 kb on - strand at 371.950 kb on + strand, within GFF3521
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 369,835 - GFF3518 0.42 +0.4 370,056 + GFF3518 0.61 -1.3 370,164 + GFF3518 0.70 -0.1 370,164 + GFF3518 0.70 -1.3 370,165 - GFF3518 0.71 +0.3 370,389 + GFF3518 0.90 -1.3 370,389 + GFF3518 0.90 -0.2 370,389 + GFF3518 0.90 +0.2 370,389 + GFF3518 0.90 -1.0 370,390 - GFF3518 0.90 -0.3 370,819 + -0.3 371,110 - GFF3519 0.60 +0.1 371,371 - +0.4 371,444 + -0.3 371,445 - +0.4 371,445 - +1.5 371,560 - GFF3520 0.25 +0.2 371,625 + GFF3520 0.49 -0.2 371,626 - GFF3520 0.49 +0.3 371,770 + -1.0 371,771 - -0.1 371,899 - -0.5 371,950 + GFF3521 0.14 +0.2
Or see this region's nucleotide sequence