Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3499 and GFF3500 are separated by 8 nucleotides GFF3500 and GFF3501 are separated by 109 nucleotides GFF3501 and GFF3502 are separated by 674 nucleotides GFF3502 and GFF3503 are separated by 4 nucleotides
GFF3499 - hypothetical protein, at 356,690 to 357,580
GFF3499
GFF3500 - hypothetical protein, at 357,589 to 358,230
GFF3500
GFF3501 - hypothetical protein, at 358,340 to 359,038
GFF3501
GFF3502 - hypothetical protein, at 359,713 to 360,003
GFF3502
GFF3503 - hypothetical protein, at 360,008 to 360,577
GFF3503
Position (kb) 358
359
360 Strain fitness (log2 ratio) -1
0
1
2
3 at 357.860 kb on + strand, within GFF3500 at 357.882 kb on - strand, within GFF3500 at 358.230 kb on + strand at 358.230 kb on + strand at 358.230 kb on + strand at 358.230 kb on + strand at 358.655 kb on - strand, within GFF3501 at 359.319 kb on + strand at 359.319 kb on + strand at 359.363 kb on + strand at 359.463 kb on - strand at 359.463 kb on - strand at 359.772 kb on + strand, within GFF3502 at 359.782 kb on - strand, within GFF3502 at 359.793 kb on + strand, within GFF3502 at 359.794 kb on - strand, within GFF3502 at 359.794 kb on - strand, within GFF3502 at 359.818 kb on + strand, within GFF3502 at 359.818 kb on + strand, within GFF3502 at 359.818 kb on + strand, within GFF3502 at 359.819 kb on - strand, within GFF3502 at 359.894 kb on - strand, within GFF3502 at 359.940 kb on + strand, within GFF3502 at 359.940 kb on + strand, within GFF3502 at 359.940 kb on + strand, within GFF3502 at 359.940 kb on + strand, within GFF3502 at 359.940 kb on + strand, within GFF3502
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 357,860 + GFF3500 0.42 +2.8 357,882 - GFF3500 0.46 +0.5 358,230 + -1.1 358,230 + -0.6 358,230 + -0.0 358,230 + -0.3 358,655 - GFF3501 0.45 +0.6 359,319 + -1.2 359,319 + -0.8 359,363 + -1.0 359,463 - +0.2 359,463 - +0.3 359,772 + GFF3502 0.20 -0.0 359,782 - GFF3502 0.24 -1.2 359,793 + GFF3502 0.27 +0.4 359,794 - GFF3502 0.28 -0.7 359,794 - GFF3502 0.28 +0.0 359,818 + GFF3502 0.36 -0.3 359,818 + GFF3502 0.36 -0.4 359,818 + GFF3502 0.36 -0.1 359,819 - GFF3502 0.36 +0.0 359,894 - GFF3502 0.62 +0.6 359,940 + GFF3502 0.78 -1.2 359,940 + GFF3502 0.78 -0.6 359,940 + GFF3502 0.78 -0.9 359,940 + GFF3502 0.78 +0.4 359,940 + GFF3502 0.78 -1.1
Or see this region's nucleotide sequence