Strain Fitness in Xanthobacter sp. DMC5 around GFF3500

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3499 and GFF3500 are separated by 8 nucleotidesGFF3500 and GFF3501 are separated by 109 nucleotides GFF3499 - hypothetical protein, at 356,690 to 357,580 GFF3499 GFF3500 - hypothetical protein, at 357,589 to 358,230 GFF3500 GFF3501 - hypothetical protein, at 358,340 to 359,038 GFF3501 Position (kb) 357 358 359Strain fitness (log2 ratio) -1 0 1 2 3at 357.247 kb on + strand, within GFF3499at 357.306 kb on + strand, within GFF3499at 357.307 kb on - strand, within GFF3499at 357.860 kb on + strand, within GFF3500at 357.882 kb on - strand, within GFF3500at 358.230 kb on + strandat 358.230 kb on + strandat 358.230 kb on + strandat 358.230 kb on + strandat 358.655 kb on - strand, within GFF3501

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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357,247 + GFF3499 0.63 -0.1
357,306 + GFF3499 0.69 +1.4
357,307 - GFF3499 0.69 -1.3
357,860 + GFF3500 0.42 +2.8
357,882 - GFF3500 0.46 +0.5
358,230 + -1.1
358,230 + -0.6
358,230 + -0.0
358,230 + -0.3
358,655 - GFF3501 0.45 +0.6

Or see this region's nucleotide sequence