Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF347 and GFF348 are separated by 30 nucleotides GFF348 and GFF349 are separated by 69 nucleotides GFF349 and GFF350 are separated by 351 nucleotides
GFF347 - hypothetical protein, at 355,193 to 355,858
GFF347
GFF348 - Putative hydrolase MhqD, at 355,889 to 356,551
GFF348
GFF349 - Putative ring-cleaving dioxygenase MhqO, at 356,621 to 357,553
GFF349
GFF350 - hypothetical protein, at 357,905 to 359,296
GFF350
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1 at 355.670 kb on + strand, within GFF347 at 355.670 kb on + strand, within GFF347 at 355.760 kb on + strand, within GFF347 at 355.761 kb on - strand, within GFF347 at 355.974 kb on - strand, within GFF348 at 356.235 kb on + strand, within GFF348 at 356.236 kb on - strand, within GFF348 at 356.671 kb on - strand at 356.796 kb on + strand, within GFF349 at 356.796 kb on + strand, within GFF349 at 356.797 kb on - strand, within GFF349 at 356.797 kb on - strand, within GFF349 at 356.797 kb on - strand, within GFF349 at 357.282 kb on + strand, within GFF349 at 357.283 kb on - strand, within GFF349 at 357.283 kb on - strand, within GFF349 at 357.414 kb on + strand, within GFF349 at 357.415 kb on - strand, within GFF349 at 357.423 kb on + strand, within GFF349 at 357.423 kb on + strand, within GFF349 at 357.424 kb on - strand, within GFF349 at 357.424 kb on - strand, within GFF349 at 357.424 kb on - strand, within GFF349 at 357.424 kb on - strand, within GFF349 at 357.424 kb on - strand, within GFF349 at 357.424 kb on - strand, within GFF349 at 357.424 kb on - strand, within GFF349 at 357.487 kb on - strand at 357.608 kb on - strand at 357.751 kb on - strand at 357.751 kb on - strand at 358.077 kb on + strand, within GFF350 at 358.078 kb on - strand, within GFF350 at 358.158 kb on - strand, within GFF350 at 358.179 kb on - strand, within GFF350 at 358.196 kb on + strand, within GFF350 at 358.196 kb on + strand, within GFF350 at 358.197 kb on - strand, within GFF350 at 358.197 kb on - strand, within GFF350 at 358.197 kb on - strand, within GFF350 at 358.242 kb on - strand, within GFF350 at 358.242 kb on - strand, within GFF350 at 358.242 kb on - strand, within GFF350 at 358.259 kb on + strand, within GFF350 at 358.340 kb on + strand, within GFF350 at 358.340 kb on + strand, within GFF350 at 358.409 kb on + strand, within GFF350 at 358.410 kb on - strand, within GFF350 at 358.410 kb on - strand, within GFF350 at 358.427 kb on + strand, within GFF350 at 358.427 kb on + strand, within GFF350 at 358.428 kb on - strand, within GFF350 at 358.428 kb on - strand, within GFF350 at 358.428 kb on - strand, within GFF350 at 358.541 kb on + strand, within GFF350 at 358.542 kb on - strand, within GFF350
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 355,670 + GFF347 0.72 -0.6 355,670 + GFF347 0.72 -0.0 355,760 + GFF347 0.85 +0.0 355,761 - GFF347 0.85 -0.1 355,974 - GFF348 0.13 -0.6 356,235 + GFF348 0.52 +0.6 356,236 - GFF348 0.52 +0.7 356,671 - -1.6 356,796 + GFF349 0.19 -0.8 356,796 + GFF349 0.19 +0.7 356,797 - GFF349 0.19 -1.9 356,797 - GFF349 0.19 +0.0 356,797 - GFF349 0.19 -0.6 357,282 + GFF349 0.71 -1.1 357,283 - GFF349 0.71 -0.0 357,283 - GFF349 0.71 -0.1 357,414 + GFF349 0.85 -0.1 357,415 - GFF349 0.85 +0.5 357,423 + GFF349 0.86 -1.0 357,423 + GFF349 0.86 +0.9 357,424 - GFF349 0.86 +0.0 357,424 - GFF349 0.86 +0.3 357,424 - GFF349 0.86 -0.5 357,424 - GFF349 0.86 -0.6 357,424 - GFF349 0.86 +0.4 357,424 - GFF349 0.86 +0.1 357,424 - GFF349 0.86 -1.9 357,487 - +1.0 357,608 - +0.3 357,751 - +0.7 357,751 - -0.9 358,077 + GFF350 0.12 -0.1 358,078 - GFF350 0.12 +0.1 358,158 - GFF350 0.18 -0.2 358,179 - GFF350 0.20 +0.4 358,196 + GFF350 0.21 -0.8 358,196 + GFF350 0.21 -0.7 358,197 - GFF350 0.21 +0.4 358,197 - GFF350 0.21 +1.1 358,197 - GFF350 0.21 +0.0 358,242 - GFF350 0.24 +0.1 358,242 - GFF350 0.24 +1.1 358,242 - GFF350 0.24 -0.7 358,259 + GFF350 0.25 -0.4 358,340 + GFF350 0.31 -0.0 358,340 + GFF350 0.31 -0.0 358,409 + GFF350 0.36 +0.3 358,410 - GFF350 0.36 -0.1 358,410 - GFF350 0.36 +0.9 358,427 + GFF350 0.38 -0.4 358,427 + GFF350 0.38 +0.5 358,428 - GFF350 0.38 +0.2 358,428 - GFF350 0.38 -2.6 358,428 - GFF350 0.38 -0.3 358,541 + GFF350 0.46 +1.1 358,542 - GFF350 0.46 +0.3
Or see this region's nucleotide sequence