Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3486 and GFF3487 are separated by 34 nucleotides GFF3487 and GFF3488 are separated by 138 nucleotides GFF3488 and GFF3489 are separated by 129 nucleotides GFF3489 and GFF3490 are separated by 210 nucleotides
GFF3486 - hypothetical protein, at 342,195 to 343,256
GFF3486
GFF3487 - hypothetical protein, at 343,291 to 343,926
GFF3487
GFF3488 - hypothetical protein, at 344,065 to 344,904
GFF3488
GFF3489 - hypothetical protein, at 345,034 to 345,471
GFF3489
GFF3490 - Virulence sensor histidine kinase PhoQ, at 345,682 to 347,106
GFF3490
Position (kb) 344
345 Strain fitness (log2 ratio) -2
-1
0
1 at 343.143 kb on + strand, within GFF3486 at 343.143 kb on + strand, within GFF3486 at 343.143 kb on + strand, within GFF3486 at 343.421 kb on + strand, within GFF3487 at 343.422 kb on - strand, within GFF3487 at 343.422 kb on - strand, within GFF3487 at 343.583 kb on + strand, within GFF3487 at 343.583 kb on + strand, within GFF3487 at 343.584 kb on - strand, within GFF3487 at 343.670 kb on + strand, within GFF3487 at 343.670 kb on + strand, within GFF3487 at 343.671 kb on - strand, within GFF3487 at 343.671 kb on - strand, within GFF3487 at 343.948 kb on + strand at 343.951 kb on + strand at 343.951 kb on + strand at 343.952 kb on - strand at 344.033 kb on + strand at 344.034 kb on - strand at 344.078 kb on + strand at 344.078 kb on + strand at 344.141 kb on - strand at 344.521 kb on - strand, within GFF3488 at 344.899 kb on + strand at 344.900 kb on - strand at 344.900 kb on - strand at 345.596 kb on + strand at 345.596 kb on + strand at 345.597 kb on - strand at 345.777 kb on - strand at 345.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 343,143 + GFF3486 0.89 -0.1 343,143 + GFF3486 0.89 -1.4 343,143 + GFF3486 0.89 +0.8 343,421 + GFF3487 0.20 -1.9 343,422 - GFF3487 0.21 +0.0 343,422 - GFF3487 0.21 -0.3 343,583 + GFF3487 0.46 -1.4 343,583 + GFF3487 0.46 -0.8 343,584 - GFF3487 0.46 -0.3 343,670 + GFF3487 0.60 +0.5 343,670 + GFF3487 0.60 +0.1 343,671 - GFF3487 0.60 -0.2 343,671 - GFF3487 0.60 -0.4 343,948 + +0.3 343,951 + +0.1 343,951 + -0.3 343,952 - +0.2 344,033 + +1.1 344,034 - +0.1 344,078 + -0.3 344,078 + -0.5 344,141 - +1.2 344,521 - GFF3488 0.54 +1.5 344,899 + +0.6 344,900 - -0.0 344,900 - -2.0 345,596 + +1.2 345,596 + -1.6 345,597 - -1.3 345,777 - -1.3 345,777 - +0.7
Or see this region's nucleotide sequence