Strain Fitness in Xanthobacter sp. DMC5 around GFF3483

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3482 and GFF3483 are separated by 227 nucleotidesGFF3483 and GFF3484 are separated by 11 nucleotidesGFF3484 and GFF3485 overlap by 4 nucleotides GFF3482 - Aminomethyltransferase, at 336,422 to 338,716 GFF3482 GFF3483 - hypothetical protein, at 338,944 to 340,626 GFF3483 GFF3484 - hypothetical protein, at 340,638 to 341,225 GFF3484 GFF3485 - Carnitine monooxygenase reductase subunit, at 341,222 to 342,178 GFF3485 Position (kb) 338 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 338.168 kb on + strand, within GFF3482at 338.168 kb on + strand, within GFF3482at 338.168 kb on + strand, within GFF3482at 338.168 kb on + strand, within GFF3482at 338.170 kb on + strand, within GFF3482at 338.170 kb on + strand, within GFF3482at 338.327 kb on + strand, within GFF3482at 338.327 kb on + strand, within GFF3482at 338.328 kb on - strand, within GFF3482at 338.354 kb on + strand, within GFF3482at 338.354 kb on + strand, within GFF3482at 338.355 kb on - strand, within GFF3482at 338.355 kb on - strand, within GFF3482at 338.753 kb on + strandat 338.753 kb on + strandat 338.754 kb on - strandat 338.819 kb on - strandat 338.819 kb on - strandat 338.825 kb on - strandat 338.927 kb on - strandat 338.927 kb on - strandat 338.927 kb on - strandat 338.949 kb on + strandat 338.949 kb on + strandat 338.949 kb on + strandat 339.110 kb on + strandat 339.110 kb on + strandat 339.110 kb on + strandat 339.205 kb on + strand, within GFF3483at 339.205 kb on + strand, within GFF3483at 339.319 kb on + strand, within GFF3483at 339.319 kb on + strand, within GFF3483at 339.320 kb on - strand, within GFF3483at 339.709 kb on + strand, within GFF3483at 339.710 kb on - strand, within GFF3483at 339.710 kb on - strand, within GFF3483at 339.710 kb on - strand, within GFF3483at 339.733 kb on + strand, within GFF3483at 339.765 kb on + strand, within GFF3483at 339.765 kb on + strand, within GFF3483at 339.913 kb on + strand, within GFF3483at 339.913 kb on + strand, within GFF3483at 339.940 kb on + strand, within GFF3483at 339.941 kb on - strand, within GFF3483at 339.941 kb on - strand, within GFF3483at 340.114 kb on + strand, within GFF3483at 340.115 kb on - strand, within GFF3483at 340.115 kb on - strand, within GFF3483at 340.115 kb on - strand, within GFF3483at 340.204 kb on + strand, within GFF3483at 340.204 kb on + strand, within GFF3483at 340.204 kb on + strand, within GFF3483at 340.205 kb on - strand, within GFF3483at 340.238 kb on - strand, within GFF3483at 340.238 kb on - strand, within GFF3483at 340.238 kb on - strand, within GFF3483at 340.345 kb on - strand, within GFF3483at 340.345 kb on - strand, within GFF3483at 340.358 kb on - strand, within GFF3483at 340.431 kb on - strand, within GFF3483at 340.431 kb on - strand, within GFF3483at 340.468 kb on + strandat 340.469 kb on - strandat 340.469 kb on - strandat 340.565 kb on - strandat 340.565 kb on - strandat 340.621 kb on + strandat 340.622 kb on - strandat 340.622 kb on - strandat 340.622 kb on - strandat 340.652 kb on + strandat 340.671 kb on + strandat 340.672 kb on - strandat 340.672 kb on - strandat 340.672 kb on - strandat 341.043 kb on + strand, within GFF3484at 341.076 kb on - strand, within GFF3484at 341.076 kb on - strand, within GFF3484at 341.076 kb on - strand, within GFF3484at 341.217 kb on + strandat 341.218 kb on - strandat 341.218 kb on - strandat 341.393 kb on + strand, within GFF3485at 341.430 kb on - strand, within GFF3485at 341.477 kb on + strand, within GFF3485at 341.477 kb on + strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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338,168 + GFF3482 0.76 +1.4
338,168 + GFF3482 0.76 -0.0
338,168 + GFF3482 0.76 -0.3
338,168 + GFF3482 0.76 +0.9
338,170 + GFF3482 0.76 +1.3
338,170 + GFF3482 0.76 -1.0
338,327 + GFF3482 0.83 -0.0
338,327 + GFF3482 0.83 -0.7
338,328 - GFF3482 0.83 -0.9
338,354 + GFF3482 0.84 -1.2
338,354 + GFF3482 0.84 +0.5
338,355 - GFF3482 0.84 +1.1
338,355 - GFF3482 0.84 -0.8
338,753 + +0.3
338,753 + +1.6
338,754 - +1.3
338,819 - -0.8
338,819 - +0.1
338,825 - +0.6
338,927 - +0.7
338,927 - -1.6
338,927 - +0.1
338,949 + -0.0
338,949 + -0.3
338,949 + -1.5
339,110 + +1.0
339,110 + +0.3
339,110 + +2.0
339,205 + GFF3483 0.16 +0.7
339,205 + GFF3483 0.16 -0.4
339,319 + GFF3483 0.22 -1.9
339,319 + GFF3483 0.22 +0.0
339,320 - GFF3483 0.22 -1.7
339,709 + GFF3483 0.45 -1.0
339,710 - GFF3483 0.46 +0.7
339,710 - GFF3483 0.46 -0.4
339,710 - GFF3483 0.46 -1.0
339,733 + GFF3483 0.47 -0.7
339,765 + GFF3483 0.49 +0.5
339,765 + GFF3483 0.49 -0.2
339,913 + GFF3483 0.58 -1.4
339,913 + GFF3483 0.58 -2.4
339,940 + GFF3483 0.59 -1.9
339,941 - GFF3483 0.59 +0.1
339,941 - GFF3483 0.59 +0.9
340,114 + GFF3483 0.70 +0.3
340,115 - GFF3483 0.70 -0.7
340,115 - GFF3483 0.70 -0.9
340,115 - GFF3483 0.70 +0.9
340,204 + GFF3483 0.75 -1.0
340,204 + GFF3483 0.75 -0.9
340,204 + GFF3483 0.75 -1.5
340,205 - GFF3483 0.75 -0.2
340,238 - GFF3483 0.77 -0.4
340,238 - GFF3483 0.77 -0.4
340,238 - GFF3483 0.77 -1.0
340,345 - GFF3483 0.83 -0.4
340,345 - GFF3483 0.83 -1.7
340,358 - GFF3483 0.84 -1.7
340,431 - GFF3483 0.88 -0.7
340,431 - GFF3483 0.88 +1.1
340,468 + -1.5
340,469 - -0.4
340,469 - +0.6
340,565 - +0.1
340,565 - -1.0
340,621 + -1.2
340,622 - +0.2
340,622 - +0.1
340,622 - -0.6
340,652 + -0.2
340,671 + -1.4
340,672 - +0.8
340,672 - -1.8
340,672 - +0.3
341,043 + GFF3484 0.69 -0.1
341,076 - GFF3484 0.74 +0.7
341,076 - GFF3484 0.74 -0.5
341,076 - GFF3484 0.74 -0.3
341,217 + +0.2
341,218 - +0.0
341,218 - +0.2
341,393 + GFF3485 0.18 +0.7
341,430 - GFF3485 0.22 +0.7
341,477 + GFF3485 0.27 -1.0
341,477 + GFF3485 0.27 +2.5
341,478 - GFF3485 0.27 -2.2
341,478 - GFF3485 0.27 -0.6
341,478 - GFF3485 0.27 +0.8
341,478 - GFF3485 0.27 -1.1
341,478 - GFF3485 0.27 +0.6
341,478 - GFF3485 0.27 +0.6
341,478 - GFF3485 0.27 -0.2

Or see this region's nucleotide sequence