Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3474 and GFF3475 are separated by 7 nucleotides GFF3475 and GFF3476 overlap by 4 nucleotides GFF3476 and GFF3477 are separated by 86 nucleotides
GFF3474 - Quinone reductase, at 328,597 to 329,157
GFF3474
GFF3475 - hypothetical protein, at 329,165 to 329,560
GFF3475
GFF3476 - 7-carboxy-7-deazaguanine synthase, at 329,557 to 330,192
GFF3476
GFF3477 - hypothetical protein, at 330,279 to 331,490
GFF3477
Position (kb) 329
330
331 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.729 kb on + strand, within GFF3474 at 328.729 kb on + strand, within GFF3474 at 328.729 kb on + strand, within GFF3474 at 328.730 kb on - strand, within GFF3474 at 328.730 kb on - strand, within GFF3474 at 328.730 kb on - strand, within GFF3474 at 328.730 kb on - strand, within GFF3474 at 328.817 kb on + strand, within GFF3474 at 328.828 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.834 kb on + strand, within GFF3474 at 328.835 kb on - strand, within GFF3474 at 328.835 kb on - strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.963 kb on + strand, within GFF3474 at 328.964 kb on - strand, within GFF3474 at 329.091 kb on + strand, within GFF3474 at 329.092 kb on - strand, within GFF3474 at 329.119 kb on + strand at 329.188 kb on - strand at 329.206 kb on - strand, within GFF3475 at 329.316 kb on + strand, within GFF3475 at 329.317 kb on - strand, within GFF3475 at 329.428 kb on - strand, within GFF3475 at 329.428 kb on - strand, within GFF3475 at 329.621 kb on + strand, within GFF3476 at 329.962 kb on + strand, within GFF3476 at 330.185 kb on + strand at 330.186 kb on - strand at 330.550 kb on + strand, within GFF3477 at 330.550 kb on + strand, within GFF3477 at 330.550 kb on + strand, within GFF3477 at 330.551 kb on - strand, within GFF3477 at 330.551 kb on - strand, within GFF3477 at 330.786 kb on - strand, within GFF3477 at 330.786 kb on - strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.892 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.898 kb on + strand, within GFF3477 at 330.899 kb on - strand, within GFF3477 at 330.986 kb on - strand, within GFF3477 at 331.013 kb on - strand, within GFF3477
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 328,729 + GFF3474 0.24 -0.0 328,729 + GFF3474 0.24 -0.2 328,729 + GFF3474 0.24 -1.8 328,730 - GFF3474 0.24 -1.0 328,730 - GFF3474 0.24 -0.5 328,730 - GFF3474 0.24 -0.3 328,730 - GFF3474 0.24 -0.4 328,817 + GFF3474 0.39 -1.1 328,828 + GFF3474 0.41 +0.3 328,834 + GFF3474 0.42 -0.1 328,834 + GFF3474 0.42 +0.3 328,834 + GFF3474 0.42 -1.1 328,834 + GFF3474 0.42 +2.0 328,834 + GFF3474 0.42 -0.5 328,835 - GFF3474 0.42 +1.1 328,835 - GFF3474 0.42 +0.2 328,963 + GFF3474 0.65 -0.3 328,963 + GFF3474 0.65 +0.3 328,963 + GFF3474 0.65 -1.1 328,963 + GFF3474 0.65 -1.2 328,963 + GFF3474 0.65 +0.6 328,963 + GFF3474 0.65 +0.0 328,964 - GFF3474 0.65 -0.0 329,091 + GFF3474 0.88 +0.5 329,092 - GFF3474 0.88 +0.6 329,119 + +1.8 329,188 - -1.6 329,206 - GFF3475 0.10 -0.0 329,316 + GFF3475 0.38 +0.3 329,317 - GFF3475 0.38 +0.7 329,428 - GFF3475 0.66 +2.3 329,428 - GFF3475 0.66 +0.1 329,621 + GFF3476 0.10 -0.2 329,962 + GFF3476 0.64 +1.1 330,185 + +0.2 330,186 - +1.0 330,550 + GFF3477 0.22 +0.5 330,550 + GFF3477 0.22 -1.2 330,550 + GFF3477 0.22 -0.2 330,551 - GFF3477 0.22 -1.2 330,551 - GFF3477 0.22 +0.2 330,786 - GFF3477 0.42 +0.1 330,786 - GFF3477 0.42 -1.2 330,892 + GFF3477 0.51 -1.0 330,892 + GFF3477 0.51 -0.2 330,892 + GFF3477 0.51 +1.1 330,892 + GFF3477 0.51 -1.0 330,892 + GFF3477 0.51 -1.5 330,898 + GFF3477 0.51 -0.2 330,898 + GFF3477 0.51 -0.4 330,898 + GFF3477 0.51 +0.4 330,898 + GFF3477 0.51 +0.4 330,898 + GFF3477 0.51 -0.1 330,899 - GFF3477 0.51 -0.7 330,986 - GFF3477 0.58 -1.4 331,013 - GFF3477 0.61 -0.4
Or see this region's nucleotide sequence