Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3468 and GFF3469 are separated by 549 nucleotides GFF3469 and GFF3470 are separated by 24 nucleotides
GFF3468 - Ferrous iron permease EfeU, at 320,783 to 321,649
GFF3468
GFF3469 - hypothetical protein, at 322,199 to 323,473
GFF3469
GFF3470 - Multicopper oxidase MmcO, at 323,498 to 324,970
GFF3470
Position (kb) 322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 321.243 kb on + strand, within GFF3468 at 321.244 kb on - strand, within GFF3468 at 321.244 kb on - strand, within GFF3468 at 321.244 kb on - strand, within GFF3468 at 321.244 kb on - strand, within GFF3468 at 321.449 kb on - strand, within GFF3468 at 321.599 kb on + strand at 321.599 kb on + strand at 321.771 kb on + strand at 321.879 kb on - strand at 321.879 kb on - strand at 321.979 kb on - strand at 321.988 kb on - strand at 322.099 kb on + strand at 322.099 kb on + strand at 322.099 kb on + strand at 322.100 kb on - strand at 322.299 kb on - strand at 322.322 kb on + strand at 322.322 kb on + strand at 322.322 kb on + strand at 322.322 kb on + strand at 322.323 kb on - strand at 322.439 kb on + strand, within GFF3469 at 322.443 kb on - strand, within GFF3469 at 322.443 kb on - strand, within GFF3469 at 322.586 kb on + strand, within GFF3469 at 322.790 kb on + strand, within GFF3469 at 322.792 kb on + strand, within GFF3469 at 322.793 kb on - strand, within GFF3469 at 322.799 kb on + strand, within GFF3469 at 322.799 kb on + strand, within GFF3469 at 322.800 kb on - strand, within GFF3469 at 322.847 kb on + strand, within GFF3469 at 322.847 kb on + strand, within GFF3469 at 323.097 kb on - strand, within GFF3469 at 323.097 kb on - strand, within GFF3469 at 323.100 kb on - strand, within GFF3469 at 323.100 kb on - strand, within GFF3469 at 323.100 kb on - strand, within GFF3469 at 323.130 kb on - strand, within GFF3469 at 323.699 kb on + strand, within GFF3470 at 323.699 kb on + strand, within GFF3470 at 323.699 kb on + strand, within GFF3470 at 323.704 kb on - strand, within GFF3470 at 323.816 kb on + strand, within GFF3470 at 323.816 kb on + strand, within GFF3470 at 323.817 kb on - strand, within GFF3470 at 323.879 kb on + strand, within GFF3470 at 323.879 kb on + strand, within GFF3470 at 323.879 kb on + strand, within GFF3470 at 323.880 kb on - strand, within GFF3470 at 323.909 kb on + strand, within GFF3470 at 323.909 kb on + strand, within GFF3470 at 323.910 kb on - strand, within GFF3470 at 324.386 kb on + strand, within GFF3470 at 324.386 kb on + strand, within GFF3470 at 324.449 kb on - strand, within GFF3470 at 324.449 kb on - strand, within GFF3470 at 324.449 kb on - strand, within GFF3470
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 321,243 + GFF3468 0.53 +0.7 321,244 - GFF3468 0.53 -0.2 321,244 - GFF3468 0.53 -0.5 321,244 - GFF3468 0.53 -0.2 321,244 - GFF3468 0.53 -0.0 321,449 - GFF3468 0.77 -0.2 321,599 + -0.5 321,599 + -0.7 321,771 + -0.1 321,879 - -0.3 321,879 - -0.4 321,979 - +1.6 321,988 - +0.6 322,099 + -0.4 322,099 + -0.4 322,099 + +0.4 322,100 - -1.8 322,299 - -1.5 322,322 + -0.0 322,322 + -2.5 322,322 + -1.1 322,322 + -1.3 322,323 - -0.3 322,439 + GFF3469 0.19 -1.3 322,443 - GFF3469 0.19 -0.3 322,443 - GFF3469 0.19 +1.8 322,586 + GFF3469 0.30 -0.0 322,790 + GFF3469 0.46 -1.9 322,792 + GFF3469 0.47 -1.3 322,793 - GFF3469 0.47 -3.1 322,799 + GFF3469 0.47 -0.3 322,799 + GFF3469 0.47 +0.4 322,800 - GFF3469 0.47 -2.0 322,847 + GFF3469 0.51 -1.5 322,847 + GFF3469 0.51 -1.6 323,097 - GFF3469 0.70 +0.5 323,097 - GFF3469 0.70 -0.3 323,100 - GFF3469 0.71 -0.5 323,100 - GFF3469 0.71 -0.6 323,100 - GFF3469 0.71 -0.3 323,130 - GFF3469 0.73 -1.4 323,699 + GFF3470 0.14 -1.2 323,699 + GFF3470 0.14 -0.5 323,699 + GFF3470 0.14 -1.5 323,704 - GFF3470 0.14 -1.9 323,816 + GFF3470 0.22 -0.6 323,816 + GFF3470 0.22 -1.6 323,817 - GFF3470 0.22 -1.8 323,879 + GFF3470 0.26 -0.2 323,879 + GFF3470 0.26 -0.7 323,879 + GFF3470 0.26 -0.1 323,880 - GFF3470 0.26 +0.4 323,909 + GFF3470 0.28 -0.7 323,909 + GFF3470 0.28 -1.1 323,910 - GFF3470 0.28 -0.8 324,386 + GFF3470 0.60 -0.5 324,386 + GFF3470 0.60 -0.0 324,449 - GFF3470 0.65 -1.7 324,449 - GFF3470 0.65 -0.6 324,449 - GFF3470 0.65 -0.5
Or see this region's nucleotide sequence