Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3417 and GFF3418 are separated by 0 nucleotides GFF3418 and GFF3419 overlap by 1 nucleotides GFF3419 and GFF3420 overlap by 4 nucleotides
GFF3416 - Oligopeptide transport ATP-binding protein OppF, at 261,588 to 262,538
GFF3416
GFF3417 - Oligopeptide transport ATP-binding protein OppD, at 262,519 to 263,535
GFF3417
GFF3418 - hypothetical protein, at 263,536 to 264,576
GFF3418
GFF3419 - Glutathione transport system permease protein GsiC, at 264,576 to 265,568
GFF3419
GFF3420 - Oligopeptide-binding protein AppA, at 265,565 to 267,208
GFF3420
Position (kb) 263
264
265 Strain fitness (log2 ratio) -2
-1
0
1 at 262.732 kb on - strand, within GFF3417 at 262.734 kb on - strand, within GFF3417 at 262.847 kb on + strand, within GFF3417 at 262.847 kb on + strand, within GFF3417 at 262.847 kb on + strand, within GFF3417 at 262.847 kb on + strand, within GFF3417 at 262.848 kb on - strand, within GFF3417 at 262.848 kb on - strand, within GFF3417 at 262.848 kb on - strand, within GFF3417 at 262.848 kb on - strand, within GFF3417 at 263.081 kb on + strand, within GFF3417 at 263.081 kb on + strand, within GFF3417 at 263.081 kb on + strand, within GFF3417 at 263.645 kb on + strand, within GFF3418 at 264.684 kb on + strand, within GFF3419 at 264.709 kb on + strand, within GFF3419 at 264.934 kb on + strand, within GFF3419 at 264.934 kb on + strand, within GFF3419 at 264.934 kb on + strand, within GFF3419 at 264.946 kb on + strand, within GFF3419 at 264.946 kb on + strand, within GFF3419 at 264.946 kb on + strand, within GFF3419 at 264.946 kb on + strand, within GFF3419 at 264.947 kb on - strand, within GFF3419 at 264.947 kb on - strand, within GFF3419 at 264.982 kb on + strand, within GFF3419 at 265.120 kb on + strand, within GFF3419 at 265.121 kb on - strand, within GFF3419 at 265.121 kb on - strand, within GFF3419 at 265.291 kb on + strand, within GFF3419 at 265.292 kb on - strand, within GFF3419 at 265.334 kb on + strand, within GFF3419 at 265.336 kb on + strand, within GFF3419 at 265.336 kb on + strand, within GFF3419 at 265.337 kb on - strand, within GFF3419
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 262,732 - GFF3417 0.21 +1.3 262,734 - GFF3417 0.21 +0.1 262,847 + GFF3417 0.32 -0.5 262,847 + GFF3417 0.32 -0.5 262,847 + GFF3417 0.32 +0.7 262,847 + GFF3417 0.32 +1.0 262,848 - GFF3417 0.32 -0.5 262,848 - GFF3417 0.32 +0.7 262,848 - GFF3417 0.32 +0.4 262,848 - GFF3417 0.32 -0.2 263,081 + GFF3417 0.55 +0.2 263,081 + GFF3417 0.55 -0.3 263,081 + GFF3417 0.55 +0.5 263,645 + GFF3418 0.10 +0.7 264,684 + GFF3419 0.11 +0.4 264,709 + GFF3419 0.13 +0.9 264,934 + GFF3419 0.36 -0.5 264,934 + GFF3419 0.36 +1.3 264,934 + GFF3419 0.36 -1.0 264,946 + GFF3419 0.37 +0.1 264,946 + GFF3419 0.37 +0.1 264,946 + GFF3419 0.37 +0.7 264,946 + GFF3419 0.37 +0.4 264,947 - GFF3419 0.37 -0.8 264,947 - GFF3419 0.37 -0.8 264,982 + GFF3419 0.41 -1.0 265,120 + GFF3419 0.55 -1.0 265,121 - GFF3419 0.55 +0.3 265,121 - GFF3419 0.55 -0.4 265,291 + GFF3419 0.72 +1.0 265,292 - GFF3419 0.72 +0.4 265,334 + GFF3419 0.76 -0.1 265,336 + GFF3419 0.77 -2.3 265,336 + GFF3419 0.77 +0.5 265,337 - GFF3419 0.77 -0.0
Or see this region's nucleotide sequence