Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3411 and GFF3412 are separated by 64 nucleotides GFF3412 and GFF3413 are separated by 30 nucleotides GFF3413 and GFF3414 are separated by 114 nucleotides
GFF3411 - putative FMNH2-dependent monooxygenase SfnC, at 255,790 to 257,019
GFF3411
GFF3412 - malonic semialdehyde reductase RutE, at 257,084 to 257,686
GFF3412
GFF3413 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 257,717 to 258,904
GFF3413
GFF3414 - Nitrilotriacetate monooxygenase component A, at 259,019 to 260,389
GFF3414
Position (kb) 257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 256.952 kb on - strand at 257.079 kb on - strand at 257.223 kb on + strand, within GFF3412 at 257.224 kb on - strand, within GFF3412 at 257.508 kb on + strand, within GFF3412 at 257.509 kb on - strand, within GFF3412 at 257.756 kb on - strand at 257.794 kb on - strand at 257.956 kb on - strand, within GFF3413 at 258.018 kb on + strand, within GFF3413 at 258.019 kb on - strand, within GFF3413 at 258.258 kb on + strand, within GFF3413 at 258.259 kb on - strand, within GFF3413 at 258.279 kb on + strand, within GFF3413 at 258.279 kb on + strand, within GFF3413 at 258.324 kb on + strand, within GFF3413 at 258.324 kb on + strand, within GFF3413 at 258.324 kb on + strand, within GFF3413 at 258.325 kb on - strand, within GFF3413 at 258.534 kb on + strand, within GFF3413 at 258.535 kb on - strand, within GFF3413 at 258.535 kb on - strand, within GFF3413 at 258.535 kb on - strand, within GFF3413 at 258.631 kb on - strand, within GFF3413 at 258.631 kb on - strand, within GFF3413 at 258.714 kb on + strand, within GFF3413 at 258.714 kb on + strand, within GFF3413 at 258.715 kb on - strand, within GFF3413 at 258.715 kb on - strand, within GFF3413 at 258.719 kb on + strand, within GFF3413 at 258.720 kb on + strand, within GFF3413 at 258.720 kb on + strand, within GFF3413 at 258.721 kb on - strand, within GFF3413 at 258.721 kb on - strand, within GFF3413 at 258.721 kb on - strand, within GFF3413 at 258.721 kb on - strand, within GFF3413 at 258.909 kb on + strand at 258.910 kb on - strand at 258.910 kb on - strand at 258.910 kb on - strand at 258.910 kb on - strand at 259.074 kb on + strand at 259.099 kb on + strand at 259.100 kb on - strand at 259.101 kb on + strand at 259.101 kb on + strand at 259.101 kb on + strand at 259.102 kb on - strand at 259.102 kb on - strand at 259.272 kb on + strand, within GFF3414 at 259.272 kb on + strand, within GFF3414 at 259.273 kb on - strand, within GFF3414 at 259.273 kb on - strand, within GFF3414 at 259.543 kb on + strand, within GFF3414 at 259.545 kb on + strand, within GFF3414 at 259.545 kb on + strand, within GFF3414 at 259.545 kb on + strand, within GFF3414 at 259.545 kb on + strand, within GFF3414 at 259.545 kb on + strand, within GFF3414 at 259.545 kb on + strand, within GFF3414 at 259.546 kb on - strand, within GFF3414 at 259.546 kb on - strand, within GFF3414 at 259.546 kb on - strand, within GFF3414 at 259.569 kb on + strand, within GFF3414 at 259.623 kb on + strand, within GFF3414 at 259.624 kb on - strand, within GFF3414 at 259.677 kb on + strand, within GFF3414 at 259.725 kb on + strand, within GFF3414 at 259.725 kb on + strand, within GFF3414 at 259.726 kb on - strand, within GFF3414 at 259.726 kb on - strand, within GFF3414 at 259.726 kb on - strand, within GFF3414 at 259.726 kb on - strand, within GFF3414 at 259.780 kb on - strand, within GFF3414
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 256,952 - -1.1 257,079 - -0.6 257,223 + GFF3412 0.23 -0.3 257,224 - GFF3412 0.23 +0.6 257,508 + GFF3412 0.70 -0.8 257,509 - GFF3412 0.70 +1.4 257,756 - -0.6 257,794 - -0.7 257,956 - GFF3413 0.20 +1.7 258,018 + GFF3413 0.25 +1.1 258,019 - GFF3413 0.25 +0.8 258,258 + GFF3413 0.46 -0.8 258,259 - GFF3413 0.46 -0.8 258,279 + GFF3413 0.47 -0.7 258,279 + GFF3413 0.47 +1.3 258,324 + GFF3413 0.51 +0.2 258,324 + GFF3413 0.51 +0.5 258,324 + GFF3413 0.51 -0.8 258,325 - GFF3413 0.51 -0.1 258,534 + GFF3413 0.69 +1.8 258,535 - GFF3413 0.69 +0.0 258,535 - GFF3413 0.69 +0.8 258,535 - GFF3413 0.69 +1.3 258,631 - GFF3413 0.77 +0.1 258,631 - GFF3413 0.77 +1.4 258,714 + GFF3413 0.84 +0.4 258,714 + GFF3413 0.84 +0.9 258,715 - GFF3413 0.84 -0.5 258,715 - GFF3413 0.84 +0.1 258,719 + GFF3413 0.84 -0.1 258,720 + GFF3413 0.84 -1.3 258,720 + GFF3413 0.84 +0.5 258,721 - GFF3413 0.85 -0.7 258,721 - GFF3413 0.85 -1.1 258,721 - GFF3413 0.85 -1.6 258,721 - GFF3413 0.85 +0.2 258,909 + -2.8 258,910 - +0.0 258,910 - -0.4 258,910 - -1.6 258,910 - +1.3 259,074 + +0.1 259,099 + +1.2 259,100 - +0.3 259,101 + +0.7 259,101 + +0.1 259,101 + +0.1 259,102 - -1.1 259,102 - +1.2 259,272 + GFF3414 0.18 -1.0 259,272 + GFF3414 0.18 +0.5 259,273 - GFF3414 0.19 -0.3 259,273 - GFF3414 0.19 +0.2 259,543 + GFF3414 0.38 -0.7 259,545 + GFF3414 0.38 +0.2 259,545 + GFF3414 0.38 +0.5 259,545 + GFF3414 0.38 -0.9 259,545 + GFF3414 0.38 +0.4 259,545 + GFF3414 0.38 +0.0 259,545 + GFF3414 0.38 +0.7 259,546 - GFF3414 0.38 -0.8 259,546 - GFF3414 0.38 +0.3 259,546 - GFF3414 0.38 -0.5 259,569 + GFF3414 0.40 +0.5 259,623 + GFF3414 0.44 -1.1 259,624 - GFF3414 0.44 -0.1 259,677 + GFF3414 0.48 +0.2 259,725 + GFF3414 0.51 -0.2 259,725 + GFF3414 0.51 +0.3 259,726 - GFF3414 0.52 -1.8 259,726 - GFF3414 0.52 +0.3 259,726 - GFF3414 0.52 -0.0 259,726 - GFF3414 0.52 -0.2 259,780 - GFF3414 0.56 -0.4
Or see this region's nucleotide sequence