Strain Fitness in Xanthobacter sp. DMC5 around GFF3408

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3407 and GFF3408 are separated by 34 nucleotidesGFF3408 and GFF3409 overlap by 4 nucleotidesGFF3409 and GFF3410 are separated by 16 nucleotides GFF3407 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 252,038 to 253,120 GFF3407 GFF3408 - Putative aliphatic sulfonates transport permease protein SsuC, at 253,155 to 254,030 GFF3408 GFF3409 - Aliphatic sulfonates import ATP-binding protein SsuB, at 254,027 to 254,728 GFF3409 GFF3410 - Putative aliphatic sulfonates-binding protein, at 254,745 to 255,737 GFF3410 Position (kb) 253 254 255Strain fitness (log2 ratio) -2 -1 0 1at 252.173 kb on + strand, within GFF3407at 252.308 kb on + strand, within GFF3407at 252.308 kb on + strand, within GFF3407at 252.309 kb on - strand, within GFF3407at 252.309 kb on - strand, within GFF3407at 252.309 kb on - strand, within GFF3407at 252.309 kb on - strand, within GFF3407at 252.315 kb on - strand, within GFF3407at 252.456 kb on - strand, within GFF3407at 252.456 kb on - strand, within GFF3407at 252.461 kb on + strand, within GFF3407at 252.462 kb on - strand, within GFF3407at 252.593 kb on + strand, within GFF3407at 252.650 kb on + strand, within GFF3407at 252.651 kb on - strand, within GFF3407at 252.651 kb on - strand, within GFF3407at 252.651 kb on - strand, within GFF3407at 252.681 kb on + strand, within GFF3407at 252.681 kb on + strand, within GFF3407at 252.682 kb on - strand, within GFF3407at 252.791 kb on + strand, within GFF3407at 252.794 kb on + strand, within GFF3407at 252.795 kb on - strand, within GFF3407at 252.947 kb on + strand, within GFF3407at 252.948 kb on - strand, within GFF3407at 252.948 kb on - strand, within GFF3407at 253.341 kb on + strand, within GFF3408at 253.341 kb on + strand, within GFF3408at 253.341 kb on + strand, within GFF3408at 253.342 kb on - strand, within GFF3408at 253.342 kb on - strand, within GFF3408at 253.662 kb on + strand, within GFF3408at 253.663 kb on - strand, within GFF3408at 253.935 kb on + strand, within GFF3408at 253.935 kb on + strand, within GFF3408at 253.935 kb on + strand, within GFF3408at 253.936 kb on - strand, within GFF3408at 254.883 kb on + strand, within GFF3410at 254.883 kb on + strand, within GFF3410at 254.884 kb on - strand, within GFF3410at 254.884 kb on - strand, within GFF3410at 254.884 kb on - strand, within GFF3410

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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252,173 + GFF3407 0.12 +1.3
252,308 + GFF3407 0.25 +0.2
252,308 + GFF3407 0.25 +0.2
252,309 - GFF3407 0.25 +0.5
252,309 - GFF3407 0.25 -0.6
252,309 - GFF3407 0.25 -0.1
252,309 - GFF3407 0.25 -0.5
252,315 - GFF3407 0.26 +0.2
252,456 - GFF3407 0.39 -0.5
252,456 - GFF3407 0.39 +0.9
252,461 + GFF3407 0.39 +1.5
252,462 - GFF3407 0.39 -0.4
252,593 + GFF3407 0.51 +0.4
252,650 + GFF3407 0.57 +0.1
252,651 - GFF3407 0.57 +0.2
252,651 - GFF3407 0.57 -0.7
252,651 - GFF3407 0.57 -0.3
252,681 + GFF3407 0.59 -0.1
252,681 + GFF3407 0.59 -0.1
252,682 - GFF3407 0.59 -0.1
252,791 + GFF3407 0.70 -1.2
252,794 + GFF3407 0.70 +0.2
252,795 - GFF3407 0.70 -1.7
252,947 + GFF3407 0.84 +0.6
252,948 - GFF3407 0.84 -0.1
252,948 - GFF3407 0.84 +0.5
253,341 + GFF3408 0.21 +0.3
253,341 + GFF3408 0.21 -0.1
253,341 + GFF3408 0.21 -0.6
253,342 - GFF3408 0.21 +0.4
253,342 - GFF3408 0.21 +0.0
253,662 + GFF3408 0.58 +0.4
253,663 - GFF3408 0.58 -0.1
253,935 + GFF3408 0.89 -1.8
253,935 + GFF3408 0.89 +0.0
253,935 + GFF3408 0.89 -0.1
253,936 - GFF3408 0.89 -0.9
254,883 + GFF3410 0.14 +0.4
254,883 + GFF3410 0.14 +0.0
254,884 - GFF3410 0.14 -0.2
254,884 - GFF3410 0.14 -1.4
254,884 - GFF3410 0.14 +0.3

Or see this region's nucleotide sequence