Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3402 and GFF3403 are separated by 298 nucleotides GFF3403 and GFF3404 are separated by 47 nucleotides
GFF3402 - Nitrilotriacetate monooxygenase component A, at 245,649 to 247,010
GFF3402
GFF3403 - hypothetical protein, at 247,309 to 248,175
GFF3403
GFF3404 - Dimethyl-sulfide monooxygenase, at 248,223 to 249,638
GFF3404
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1 at 246.457 kb on + strand, within GFF3402 at 246.551 kb on - strand, within GFF3402 at 246.728 kb on + strand, within GFF3402 at 246.729 kb on - strand, within GFF3402 at 246.729 kb on - strand, within GFF3402 at 247.084 kb on - strand at 247.087 kb on + strand at 247.088 kb on - strand at 247.088 kb on - strand at 247.088 kb on - strand at 247.463 kb on + strand, within GFF3403 at 247.463 kb on + strand, within GFF3403 at 247.464 kb on - strand, within GFF3403 at 247.499 kb on + strand, within GFF3403 at 247.499 kb on + strand, within GFF3403 at 247.500 kb on - strand, within GFF3403 at 247.500 kb on - strand, within GFF3403 at 248.216 kb on + strand at 248.216 kb on + strand at 248.216 kb on + strand at 248.217 kb on - strand at 248.339 kb on + strand at 248.350 kb on + strand at 248.350 kb on + strand at 248.351 kb on - strand at 248.362 kb on + strand at 248.363 kb on - strand at 248.632 kb on + strand, within GFF3404 at 248.633 kb on - strand, within GFF3404 at 248.633 kb on - strand, within GFF3404 at 248.633 kb on - strand, within GFF3404 at 248.719 kb on + strand, within GFF3404 at 248.719 kb on + strand, within GFF3404 at 248.719 kb on + strand, within GFF3404 at 248.719 kb on + strand, within GFF3404 at 248.719 kb on + strand, within GFF3404 at 248.720 kb on - strand, within GFF3404 at 248.720 kb on - strand, within GFF3404 at 248.720 kb on - strand, within GFF3404 at 248.720 kb on - strand, within GFF3404 at 248.728 kb on + strand, within GFF3404 at 248.728 kb on + strand, within GFF3404 at 248.951 kb on - strand, within GFF3404 at 248.951 kb on - strand, within GFF3404 at 249.007 kb on + strand, within GFF3404 at 249.008 kb on - strand, within GFF3404 at 249.010 kb on + strand, within GFF3404 at 249.011 kb on - strand, within GFF3404 at 249.011 kb on - strand, within GFF3404 at 249.118 kb on + strand, within GFF3404
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 246,457 + GFF3402 0.59 -0.6 246,551 - GFF3402 0.66 +0.2 246,728 + GFF3402 0.79 +0.6 246,729 - GFF3402 0.79 +1.4 246,729 - GFF3402 0.79 +0.7 247,084 - -2.3 247,087 + +1.2 247,088 - -0.3 247,088 - -0.5 247,088 - -1.4 247,463 + GFF3403 0.18 -0.5 247,463 + GFF3403 0.18 -1.0 247,464 - GFF3403 0.18 +0.7 247,499 + GFF3403 0.22 -0.3 247,499 + GFF3403 0.22 +0.1 247,500 - GFF3403 0.22 +0.2 247,500 - GFF3403 0.22 -1.0 248,216 + -0.3 248,216 + +0.4 248,216 + -0.0 248,217 - -0.8 248,339 + +0.5 248,350 + +0.2 248,350 + -1.6 248,351 - -2.2 248,362 + -0.5 248,363 - -0.3 248,632 + GFF3404 0.29 -0.7 248,633 - GFF3404 0.29 +0.3 248,633 - GFF3404 0.29 -1.5 248,633 - GFF3404 0.29 -0.2 248,719 + GFF3404 0.35 +0.6 248,719 + GFF3404 0.35 +0.2 248,719 + GFF3404 0.35 +0.6 248,719 + GFF3404 0.35 -0.7 248,719 + GFF3404 0.35 +0.7 248,720 - GFF3404 0.35 +0.8 248,720 - GFF3404 0.35 -1.1 248,720 - GFF3404 0.35 -0.8 248,720 - GFF3404 0.35 -0.3 248,728 + GFF3404 0.36 -1.0 248,728 + GFF3404 0.36 -0.1 248,951 - GFF3404 0.51 -1.3 248,951 - GFF3404 0.51 +0.7 249,007 + GFF3404 0.55 -1.3 249,008 - GFF3404 0.55 +0.0 249,010 + GFF3404 0.56 +0.5 249,011 - GFF3404 0.56 -2.2 249,011 - GFF3404 0.56 -0.6 249,118 + GFF3404 0.63 +1.0
Or see this region's nucleotide sequence