Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF338 and GFF339 overlap by 4 nucleotides GFF339 and GFF340 are separated by 83 nucleotides GFF340 and GFF341 overlap by 1 nucleotides GFF341 and GFF342 are separated by 118 nucleotides GFF342 and GFF343 overlap by 20 nucleotides
GFF338 - hypothetical protein, at 344,639 to 345,292
GFF338
GFF339 - hypothetical protein, at 345,289 to 345,777
GFF339
GFF340 - hypothetical protein, at 345,861 to 346,739
GFF340
GFF341 - hypothetical protein, at 346,739 to 347,107
GFF341
GFF342 - hypothetical protein, at 347,226 to 347,552
GFF342
GFF343 - hypothetical protein, at 347,533 to 347,757
GFF343
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.267 kb on + strand at 345.489 kb on - strand, within GFF339 at 345.589 kb on + strand, within GFF339 at 345.918 kb on + strand at 345.978 kb on + strand, within GFF340 at 345.978 kb on + strand, within GFF340 at 345.978 kb on + strand, within GFF340 at 345.979 kb on - strand, within GFF340 at 345.987 kb on + strand, within GFF340 at 346.056 kb on + strand, within GFF340 at 346.056 kb on + strand, within GFF340 at 346.056 kb on + strand, within GFF340 at 346.056 kb on + strand, within GFF340 at 346.057 kb on - strand, within GFF340 at 346.057 kb on - strand, within GFF340 at 346.069 kb on - strand, within GFF340 at 346.113 kb on + strand, within GFF340 at 346.113 kb on + strand, within GFF340 at 346.113 kb on + strand, within GFF340 at 346.114 kb on - strand, within GFF340 at 346.114 kb on - strand, within GFF340 at 346.267 kb on + strand, within GFF340 at 346.267 kb on + strand, within GFF340 at 346.267 kb on + strand, within GFF340 at 346.268 kb on - strand, within GFF340 at 346.268 kb on - strand, within GFF340 at 346.268 kb on - strand, within GFF340 at 346.428 kb on + strand, within GFF340 at 346.428 kb on + strand, within GFF340 at 346.428 kb on + strand, within GFF340 at 346.428 kb on + strand, within GFF340 at 346.429 kb on - strand, within GFF340 at 346.429 kb on - strand, within GFF340 at 346.429 kb on - strand, within GFF340 at 346.429 kb on - strand, within GFF340 at 346.620 kb on + strand, within GFF340 at 346.620 kb on + strand, within GFF340 at 347.044 kb on + strand, within GFF341 at 347.105 kb on + strand at 347.105 kb on + strand at 347.106 kb on - strand at 347.106 kb on - strand at 347.106 kb on - strand at 347.106 kb on - strand at 347.112 kb on + strand at 347.112 kb on + strand at 347.422 kb on + strand, within GFF342 at 347.422 kb on + strand, within GFF342 at 347.423 kb on - strand, within GFF342 at 347.423 kb on - strand, within GFF342 at 347.550 kb on + strand at 347.550 kb on + strand at 347.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 345,267 + -1.9 345,489 - GFF339 0.41 +0.5 345,589 + GFF339 0.61 +0.2 345,918 + -0.5 345,978 + GFF340 0.13 +0.9 345,978 + GFF340 0.13 -0.2 345,978 + GFF340 0.13 -0.3 345,979 - GFF340 0.13 -0.3 345,987 + GFF340 0.14 -1.4 346,056 + GFF340 0.22 +0.3 346,056 + GFF340 0.22 -1.1 346,056 + GFF340 0.22 +0.8 346,056 + GFF340 0.22 -1.7 346,057 - GFF340 0.22 +0.2 346,057 - GFF340 0.22 +1.6 346,069 - GFF340 0.24 -0.3 346,113 + GFF340 0.29 +1.4 346,113 + GFF340 0.29 +0.6 346,113 + GFF340 0.29 +0.3 346,114 - GFF340 0.29 +1.1 346,114 - GFF340 0.29 -0.6 346,267 + GFF340 0.46 +1.9 346,267 + GFF340 0.46 -0.4 346,267 + GFF340 0.46 -0.4 346,268 - GFF340 0.46 -0.9 346,268 - GFF340 0.46 -1.0 346,268 - GFF340 0.46 -0.0 346,428 + GFF340 0.65 +0.4 346,428 + GFF340 0.65 -0.0 346,428 + GFF340 0.65 +0.9 346,428 + GFF340 0.65 -0.3 346,429 - GFF340 0.65 -1.3 346,429 - GFF340 0.65 +0.7 346,429 - GFF340 0.65 -1.5 346,429 - GFF340 0.65 -1.1 346,620 + GFF340 0.86 +0.3 346,620 + GFF340 0.86 -0.1 347,044 + GFF341 0.83 +1.3 347,105 + -1.4 347,105 + +1.5 347,106 - +0.9 347,106 - -0.0 347,106 - -0.8 347,106 - +0.1 347,112 + +0.3 347,112 + -2.5 347,422 + GFF342 0.60 +0.2 347,422 + GFF342 0.60 +0.6 347,423 - GFF342 0.60 +0.9 347,423 - GFF342 0.60 -0.1 347,550 + +1.0 347,550 + -0.3 347,551 - +0.4
Or see this region's nucleotide sequence