Strain Fitness in Xanthobacter sp. DMC5 around GFF3391

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3390 and GFF3391 are separated by 116 nucleotidesGFF3391 and GFF3392 are separated by 6 nucleotides GFF3390 - hypothetical protein, at 236,561 to 237,427 GFF3390 GFF3391 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 237,544 to 238,566 GFF3391 GFF3392 - Adaptive-response sensory-kinase SasA, at 238,573 to 239,655 GFF3392 Position (kb) 237 238 239Strain fitness (log2 ratio) -1 0 1at 237.514 kb on + strandat 237.515 kb on - strandat 239.153 kb on + strand, within GFF3392at 239.154 kb on - strand, within GFF3392

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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237,514 + +1.2
237,515 - -0.7
239,153 + GFF3392 0.54 +0.5
239,154 - GFF3392 0.54 -0.1

Or see this region's nucleotide sequence