Strain Fitness in Xanthobacter sp. DMC5 around GFF3390

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3389 and GFF3390 are separated by 202 nucleotidesGFF3390 and GFF3391 are separated by 116 nucleotides GFF3389 - Superoxide dismutase [Mn], at 235,762 to 236,358 GFF3389 GFF3390 - hypothetical protein, at 236,561 to 237,427 GFF3390 GFF3391 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 237,544 to 238,566 GFF3391 Position (kb) 236 237 238Strain fitness (log2 ratio) -1 0 1 2at 235.581 kb on + strandat 235.638 kb on + strandat 235.675 kb on + strandat 235.676 kb on - strandat 236.377 kb on - strandat 236.428 kb on + strandat 236.428 kb on + strandat 236.428 kb on + strandat 236.428 kb on + strandat 236.429 kb on - strandat 236.429 kb on - strandat 236.430 kb on - strandat 236.451 kb on + strandat 236.451 kb on + strandat 236.451 kb on + strandat 236.451 kb on + strandat 236.451 kb on + strandat 236.509 kb on + strandat 237.514 kb on + strandat 237.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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235,581 + +1.3
235,638 + -0.8
235,675 + -0.8
235,676 - +0.6
236,377 - +0.7
236,428 + -1.1
236,428 + -0.4
236,428 + -0.7
236,428 + -1.6
236,429 - +1.9
236,429 - +0.3
236,430 - -0.7
236,451 + +0.2
236,451 + -0.4
236,451 + -0.4
236,451 + +1.3
236,451 + +0.0
236,509 + -0.1
237,514 + +1.2
237,515 - -0.7

Or see this region's nucleotide sequence