Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3380 and GFF3381 are separated by 568 nucleotides GFF3381 and GFF3382 are separated by 90 nucleotides GFF3382 and GFF3383 are separated by 227 nucleotides
GFF3380 - HTH-type transcriptional activator RhaR, at 224,507 to 225,394
GFF3380
GFF3381 - hypothetical protein, at 225,963 to 226,370
GFF3381
GFF3382 - hypothetical protein, at 226,461 to 226,841
GFF3382
GFF3383 - hypothetical protein, at 227,069 to 228,871
GFF3383
Position (kb) 225
226
227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 224.975 kb on + strand, within GFF3380 at 224.975 kb on + strand, within GFF3380 at 224.976 kb on - strand, within GFF3380 at 225.002 kb on + strand, within GFF3380 at 225.003 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380 at 225.265 kb on + strand, within GFF3380 at 225.265 kb on + strand, within GFF3380 at 225.353 kb on - strand at 225.353 kb on - strand at 225.353 kb on - strand at 225.362 kb on - strand at 225.411 kb on + strand at 225.426 kb on - strand at 225.541 kb on + strand at 225.541 kb on + strand at 225.706 kb on + strand at 225.859 kb on - strand at 225.859 kb on - strand at 225.859 kb on - strand at 225.892 kb on + strand at 225.968 kb on - strand at 225.968 kb on - strand at 225.968 kb on - strand at 226.363 kb on + strand at 226.364 kb on - strand at 226.537 kb on + strand, within GFF3382 at 226.538 kb on - strand, within GFF3382 at 226.715 kb on - strand, within GFF3382 at 226.715 kb on - strand, within GFF3382 at 227.239 kb on - strand at 227.239 kb on - strand at 227.301 kb on - strand, within GFF3383 at 227.301 kb on - strand, within GFF3383
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 224,975 + GFF3380 0.53 +0.9 224,975 + GFF3380 0.53 +1.3 224,976 - GFF3380 0.53 -0.1 225,002 + GFF3380 0.56 +0.8 225,003 - GFF3380 0.56 -0.6 225,225 - GFF3380 0.81 -1.1 225,225 - GFF3380 0.81 -0.3 225,225 - GFF3380 0.81 -1.5 225,265 + GFF3380 0.85 +0.4 225,265 + GFF3380 0.85 -0.4 225,353 - +0.8 225,353 - -0.3 225,353 - -0.6 225,362 - +0.3 225,411 + +0.3 225,426 - +0.1 225,541 + -0.7 225,541 + +0.2 225,706 + +0.5 225,859 - +1.0 225,859 - +1.8 225,859 - +0.9 225,892 + -0.6 225,968 - +0.2 225,968 - +0.8 225,968 - +1.2 226,363 + -0.1 226,364 - +0.4 226,537 + GFF3382 0.20 +0.4 226,538 - GFF3382 0.20 -1.0 226,715 - GFF3382 0.67 +0.8 226,715 - GFF3382 0.67 +0.4 227,239 - +0.4 227,239 - -1.4 227,301 - GFF3383 0.13 -1.9 227,301 - GFF3383 0.13 +0.2
Or see this region's nucleotide sequence