Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3379 and GFF3380 are separated by 266 nucleotides GFF3380 and GFF3381 are separated by 568 nucleotides
GFF3379 - NADPH dehydrogenase, at 223,077 to 224,240
GFF3379
GFF3380 - HTH-type transcriptional activator RhaR, at 224,507 to 225,394
GFF3380
GFF3381 - hypothetical protein, at 225,963 to 226,370
GFF3381
Position (kb) 224
225
226 Strain fitness (log2 ratio) -1
0
1
2 at 223.643 kb on - strand, within GFF3379 at 223.643 kb on - strand, within GFF3379 at 223.682 kb on + strand, within GFF3379 at 223.683 kb on - strand, within GFF3379 at 223.683 kb on - strand, within GFF3379 at 223.683 kb on - strand, within GFF3379 at 223.683 kb on - strand, within GFF3379 at 223.763 kb on - strand, within GFF3379 at 223.763 kb on - strand, within GFF3379 at 223.763 kb on - strand, within GFF3379 at 224.185 kb on - strand at 224.202 kb on + strand at 224.202 kb on + strand at 224.202 kb on + strand at 224.202 kb on + strand at 224.203 kb on - strand at 224.203 kb on - strand at 224.338 kb on + strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.609 kb on - strand, within GFF3380 at 224.654 kb on + strand, within GFF3380 at 224.655 kb on - strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.806 kb on - strand, within GFF3380 at 224.806 kb on - strand, within GFF3380 at 224.807 kb on + strand, within GFF3380 at 224.807 kb on + strand, within GFF3380 at 224.808 kb on - strand, within GFF3380 at 224.808 kb on - strand, within GFF3380 at 224.846 kb on - strand, within GFF3380 at 224.846 kb on - strand, within GFF3380 at 224.975 kb on + strand, within GFF3380 at 224.975 kb on + strand, within GFF3380 at 224.976 kb on - strand, within GFF3380 at 225.002 kb on + strand, within GFF3380 at 225.003 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380 at 225.265 kb on + strand, within GFF3380 at 225.265 kb on + strand, within GFF3380 at 225.353 kb on - strand at 225.353 kb on - strand at 225.353 kb on - strand at 225.362 kb on - strand at 225.411 kb on + strand at 225.426 kb on - strand at 225.541 kb on + strand at 225.541 kb on + strand at 225.706 kb on + strand at 225.859 kb on - strand at 225.859 kb on - strand at 225.859 kb on - strand at 225.892 kb on + strand at 225.968 kb on - strand at 225.968 kb on - strand at 225.968 kb on - strand at 226.363 kb on + strand at 226.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 223,643 - GFF3379 0.49 +1.9 223,643 - GFF3379 0.49 +0.7 223,682 + GFF3379 0.52 +0.4 223,683 - GFF3379 0.52 +0.5 223,683 - GFF3379 0.52 +0.5 223,683 - GFF3379 0.52 +0.0 223,683 - GFF3379 0.52 +1.0 223,763 - GFF3379 0.59 +0.2 223,763 - GFF3379 0.59 +0.5 223,763 - GFF3379 0.59 +0.5 224,185 - -0.0 224,202 + -0.2 224,202 + +0.3 224,202 + +0.0 224,202 + +0.7 224,203 - +0.4 224,203 - +0.2 224,338 + +1.2 224,339 - -1.2 224,339 - -1.1 224,609 - GFF3380 0.11 +0.7 224,654 + GFF3380 0.17 +0.2 224,655 - GFF3380 0.17 +1.3 224,805 + GFF3380 0.34 +0.5 224,805 + GFF3380 0.34 -0.5 224,805 + GFF3380 0.34 -0.1 224,805 + GFF3380 0.34 +0.3 224,805 + GFF3380 0.34 -0.5 224,806 - GFF3380 0.34 -0.6 224,806 - GFF3380 0.34 -1.0 224,807 + GFF3380 0.34 -0.8 224,807 + GFF3380 0.34 +0.1 224,808 - GFF3380 0.34 -0.1 224,808 - GFF3380 0.34 -0.8 224,846 - GFF3380 0.38 +1.3 224,846 - GFF3380 0.38 +0.1 224,975 + GFF3380 0.53 +0.9 224,975 + GFF3380 0.53 +1.3 224,976 - GFF3380 0.53 -0.1 225,002 + GFF3380 0.56 +0.8 225,003 - GFF3380 0.56 -0.6 225,225 - GFF3380 0.81 -1.1 225,225 - GFF3380 0.81 -0.3 225,225 - GFF3380 0.81 -1.5 225,265 + GFF3380 0.85 +0.4 225,265 + GFF3380 0.85 -0.4 225,353 - +0.8 225,353 - -0.3 225,353 - -0.6 225,362 - +0.3 225,411 + +0.3 225,426 - +0.1 225,541 + -0.7 225,541 + +0.2 225,706 + +0.5 225,859 - +1.0 225,859 - +1.8 225,859 - +0.9 225,892 + -0.6 225,968 - +0.2 225,968 - +0.8 225,968 - +1.2 226,363 + -0.1 226,364 - +0.4
Or see this region's nucleotide sequence