Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3377 and GFF3378 are separated by 5 nucleotides GFF3378 and GFF3379 are separated by 50 nucleotides GFF3379 and GFF3380 are separated by 266 nucleotides
GFF3377 - Cation/acetate symporter ActP, at 221,135 to 222,754
GFF3377
GFF3378 - hypothetical protein, at 222,760 to 223,026
GFF3378
GFF3379 - NADPH dehydrogenase, at 223,077 to 224,240
GFF3379
GFF3380 - HTH-type transcriptional activator RhaR, at 224,507 to 225,394
GFF3380
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.163 kb on - strand, within GFF3377 at 222.163 kb on - strand, within GFF3377 at 222.163 kb on - strand, within GFF3377 at 222.204 kb on + strand, within GFF3377 at 222.205 kb on - strand, within GFF3377 at 222.205 kb on - strand, within GFF3377 at 222.205 kb on - strand, within GFF3377 at 222.205 kb on - strand, within GFF3377 at 222.264 kb on + strand, within GFF3377 at 222.265 kb on - strand, within GFF3377 at 222.298 kb on + strand, within GFF3377 at 222.352 kb on + strand, within GFF3377 at 222.555 kb on + strand, within GFF3377 at 222.555 kb on + strand, within GFF3377 at 222.555 kb on + strand, within GFF3377 at 222.556 kb on - strand, within GFF3377 at 222.556 kb on - strand, within GFF3377 at 222.783 kb on + strand at 222.803 kb on + strand, within GFF3378 at 222.803 kb on + strand, within GFF3378 at 222.803 kb on + strand, within GFF3378 at 222.803 kb on + strand, within GFF3378 at 222.804 kb on - strand, within GFF3378 at 222.804 kb on - strand, within GFF3378 at 222.847 kb on + strand, within GFF3378 at 222.939 kb on - strand, within GFF3378 at 222.939 kb on - strand, within GFF3378 at 223.156 kb on + strand at 223.156 kb on + strand at 223.160 kb on + strand at 223.161 kb on - strand at 223.161 kb on - strand at 223.161 kb on - strand at 223.231 kb on + strand, within GFF3379 at 223.643 kb on - strand, within GFF3379 at 223.643 kb on - strand, within GFF3379 at 223.682 kb on + strand, within GFF3379 at 223.683 kb on - strand, within GFF3379 at 223.683 kb on - strand, within GFF3379 at 223.683 kb on - strand, within GFF3379 at 223.683 kb on - strand, within GFF3379 at 223.763 kb on - strand, within GFF3379 at 223.763 kb on - strand, within GFF3379 at 223.763 kb on - strand, within GFF3379 at 224.185 kb on - strand at 224.202 kb on + strand at 224.202 kb on + strand at 224.202 kb on + strand at 224.202 kb on + strand at 224.203 kb on - strand at 224.203 kb on - strand at 224.338 kb on + strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.609 kb on - strand, within GFF3380 at 224.654 kb on + strand, within GFF3380 at 224.655 kb on - strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.805 kb on + strand, within GFF3380 at 224.806 kb on - strand, within GFF3380 at 224.806 kb on - strand, within GFF3380 at 224.807 kb on + strand, within GFF3380 at 224.807 kb on + strand, within GFF3380 at 224.808 kb on - strand, within GFF3380 at 224.808 kb on - strand, within GFF3380 at 224.846 kb on - strand, within GFF3380 at 224.846 kb on - strand, within GFF3380 at 224.975 kb on + strand, within GFF3380 at 224.975 kb on + strand, within GFF3380 at 224.976 kb on - strand, within GFF3380 at 225.002 kb on + strand, within GFF3380 at 225.003 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380 at 225.225 kb on - strand, within GFF3380
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 222,163 - GFF3377 0.63 +0.1 222,163 - GFF3377 0.63 -2.7 222,163 - GFF3377 0.63 +0.1 222,204 + GFF3377 0.66 -1.1 222,205 - GFF3377 0.66 -0.3 222,205 - GFF3377 0.66 +1.7 222,205 - GFF3377 0.66 +0.1 222,205 - GFF3377 0.66 +0.0 222,264 + GFF3377 0.70 +0.3 222,265 - GFF3377 0.70 -0.1 222,298 + GFF3377 0.72 -1.1 222,352 + GFF3377 0.75 -0.7 222,555 + GFF3377 0.88 -0.3 222,555 + GFF3377 0.88 -0.7 222,555 + GFF3377 0.88 +0.3 222,556 - GFF3377 0.88 +0.1 222,556 - GFF3377 0.88 -0.4 222,783 + +1.3 222,803 + GFF3378 0.16 +0.5 222,803 + GFF3378 0.16 +0.2 222,803 + GFF3378 0.16 -0.8 222,803 + GFF3378 0.16 +1.0 222,804 - GFF3378 0.16 +0.5 222,804 - GFF3378 0.16 -2.0 222,847 + GFF3378 0.33 -0.1 222,939 - GFF3378 0.67 -1.6 222,939 - GFF3378 0.67 +0.5 223,156 + -0.4 223,156 + -0.1 223,160 + -0.9 223,161 - -1.0 223,161 - -1.2 223,161 - -1.3 223,231 + GFF3379 0.13 -0.7 223,643 - GFF3379 0.49 +1.9 223,643 - GFF3379 0.49 +0.7 223,682 + GFF3379 0.52 +0.4 223,683 - GFF3379 0.52 +0.5 223,683 - GFF3379 0.52 +0.5 223,683 - GFF3379 0.52 +0.0 223,683 - GFF3379 0.52 +1.0 223,763 - GFF3379 0.59 +0.2 223,763 - GFF3379 0.59 +0.5 223,763 - GFF3379 0.59 +0.5 224,185 - -0.0 224,202 + -0.2 224,202 + +0.3 224,202 + +0.0 224,202 + +0.7 224,203 - +0.4 224,203 - +0.2 224,338 + +1.2 224,339 - -1.2 224,339 - -1.1 224,609 - GFF3380 0.11 +0.7 224,654 + GFF3380 0.17 +0.2 224,655 - GFF3380 0.17 +1.3 224,805 + GFF3380 0.34 +0.5 224,805 + GFF3380 0.34 -0.5 224,805 + GFF3380 0.34 -0.1 224,805 + GFF3380 0.34 +0.3 224,805 + GFF3380 0.34 -0.5 224,806 - GFF3380 0.34 -0.6 224,806 - GFF3380 0.34 -1.0 224,807 + GFF3380 0.34 -0.8 224,807 + GFF3380 0.34 +0.1 224,808 - GFF3380 0.34 -0.1 224,808 - GFF3380 0.34 -0.8 224,846 - GFF3380 0.38 +1.3 224,846 - GFF3380 0.38 +0.1 224,975 + GFF3380 0.53 +0.9 224,975 + GFF3380 0.53 +1.3 224,976 - GFF3380 0.53 -0.1 225,002 + GFF3380 0.56 +0.8 225,003 - GFF3380 0.56 -0.6 225,225 - GFF3380 0.81 -1.1 225,225 - GFF3380 0.81 -0.3 225,225 - GFF3380 0.81 -1.5
Or see this region's nucleotide sequence