Strain Fitness in Xanthobacter sp. DMC5 around GFF3374

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3372 and GFF3373 overlap by 4 nucleotidesGFF3373 and GFF3374 overlap by 4 nucleotidesGFF3374 and GFF3375 are separated by 52 nucleotides GFF3372 - hypothetical protein, at 216,534 to 216,950 GFF3372 GFF3373 - Taurine import ATP-binding protein TauB, at 216,947 to 217,798 GFF3373 GFF3374 - hypothetical protein, at 217,795 to 218,793 GFF3374 GFF3375 - hypothetical protein, at 218,846 to 219,613 GFF3375 Position (kb) 217 218 219Strain fitness (log2 ratio) -2 -1 0 1 2at 216.853 kb on + strand, within GFF3372at 216.853 kb on + strand, within GFF3372at 216.901 kb on + strand, within GFF3372at 217.068 kb on + strand, within GFF3373at 217.069 kb on - strand, within GFF3373at 217.221 kb on + strand, within GFF3373at 217.320 kb on + strand, within GFF3373at 217.323 kb on + strand, within GFF3373at 217.324 kb on - strand, within GFF3373at 217.329 kb on + strand, within GFF3373at 217.329 kb on + strand, within GFF3373at 217.473 kb on + strand, within GFF3373at 217.488 kb on + strand, within GFF3373at 217.488 kb on + strand, within GFF3373at 217.488 kb on + strand, within GFF3373at 217.546 kb on - strand, within GFF3373at 217.570 kb on - strand, within GFF3373at 217.651 kb on + strand, within GFF3373at 217.652 kb on - strand, within GFF3373at 217.653 kb on + strand, within GFF3373at 217.654 kb on - strand, within GFF3373at 217.836 kb on - strandat 217.935 kb on - strand, within GFF3374at 217.935 kb on - strand, within GFF3374at 217.935 kb on - strand, within GFF3374at 217.979 kb on + strand, within GFF3374at 217.980 kb on - strand, within GFF3374at 218.009 kb on + strand, within GFF3374at 218.009 kb on + strand, within GFF3374at 218.010 kb on - strand, within GFF3374at 218.010 kb on - strand, within GFF3374at 218.117 kb on + strand, within GFF3374at 218.118 kb on - strand, within GFF3374at 218.118 kb on - strand, within GFF3374at 218.118 kb on - strand, within GFF3374at 218.129 kb on + strand, within GFF3374at 218.129 kb on + strand, within GFF3374at 218.130 kb on - strand, within GFF3374at 218.281 kb on + strand, within GFF3374at 218.282 kb on - strand, within GFF3374at 218.321 kb on + strand, within GFF3374at 218.652 kb on - strand, within GFF3374at 218.652 kb on - strand, within GFF3374at 218.654 kb on + strand, within GFF3374at 218.655 kb on - strand, within GFF3374at 218.941 kb on - strand, within GFF3375at 218.941 kb on - strand, within GFF3375at 219.093 kb on + strand, within GFF3375at 219.093 kb on + strand, within GFF3375at 219.094 kb on - strand, within GFF3375at 219.094 kb on - strand, within GFF3375at 219.094 kb on - strand, within GFF3375at 219.337 kb on - strand, within GFF3375at 219.339 kb on - strand, within GFF3375at 219.339 kb on - strand, within GFF3375at 219.426 kb on + strand, within GFF3375at 219.468 kb on - strand, within GFF3375at 219.538 kb on - strandat 219.538 kb on - strandat 219.542 kb on + strandat 219.542 kb on + strandat 219.542 kb on + strandat 219.543 kb on - strandat 219.543 kb on - strandat 219.543 kb on - strandat 219.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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216,853 + GFF3372 0.76 +0.1
216,853 + GFF3372 0.76 +1.2
216,901 + GFF3372 0.88 -0.5
217,068 + GFF3373 0.14 -0.2
217,069 - GFF3373 0.14 +1.5
217,221 + GFF3373 0.32 +0.2
217,320 + GFF3373 0.44 +0.1
217,323 + GFF3373 0.44 -0.1
217,324 - GFF3373 0.44 +0.9
217,329 + GFF3373 0.45 -0.1
217,329 + GFF3373 0.45 +0.2
217,473 + GFF3373 0.62 -0.2
217,488 + GFF3373 0.63 +1.9
217,488 + GFF3373 0.63 +0.1
217,488 + GFF3373 0.63 +0.6
217,546 - GFF3373 0.70 +0.2
217,570 - GFF3373 0.73 +0.1
217,651 + GFF3373 0.83 -0.1
217,652 - GFF3373 0.83 -0.8
217,653 + GFF3373 0.83 -0.5
217,654 - GFF3373 0.83 +0.4
217,836 - +0.2
217,935 - GFF3374 0.14 +0.5
217,935 - GFF3374 0.14 +0.3
217,935 - GFF3374 0.14 -0.6
217,979 + GFF3374 0.18 +0.7
217,980 - GFF3374 0.19 -1.3
218,009 + GFF3374 0.21 +0.1
218,009 + GFF3374 0.21 +0.2
218,010 - GFF3374 0.22 -0.3
218,010 - GFF3374 0.22 -0.3
218,117 + GFF3374 0.32 -1.0
218,118 - GFF3374 0.32 +1.3
218,118 - GFF3374 0.32 -0.6
218,118 - GFF3374 0.32 -0.6
218,129 + GFF3374 0.33 +0.8
218,129 + GFF3374 0.33 -0.8
218,130 - GFF3374 0.34 -0.3
218,281 + GFF3374 0.49 -1.1
218,282 - GFF3374 0.49 -0.4
218,321 + GFF3374 0.53 -0.8
218,652 - GFF3374 0.86 -0.5
218,652 - GFF3374 0.86 -2.0
218,654 + GFF3374 0.86 -0.2
218,655 - GFF3374 0.86 +2.6
218,941 - GFF3375 0.12 -0.5
218,941 - GFF3375 0.12 +0.4
219,093 + GFF3375 0.32 -0.4
219,093 + GFF3375 0.32 +0.4
219,094 - GFF3375 0.32 -0.8
219,094 - GFF3375 0.32 -0.7
219,094 - GFF3375 0.32 +0.2
219,337 - GFF3375 0.64 +0.3
219,339 - GFF3375 0.64 +1.5
219,339 - GFF3375 0.64 -0.4
219,426 + GFF3375 0.76 +0.3
219,468 - GFF3375 0.81 +1.1
219,538 - +0.7
219,538 - -0.5
219,542 + +0.3
219,542 + -0.1
219,542 + +0.2
219,543 - +0.5
219,543 - -0.3
219,543 - -0.3
219,543 - -0.3

Or see this region's nucleotide sequence