Strain Fitness in Xanthobacter sp. DMC5 around GFF3365

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3364 and GFF3365 are separated by 45 nucleotidesGFF3365 and GFF3366 overlap by 4 nucleotides GFF3364 - Ureidoglycolate lyase, at 209,264 to 210,109 GFF3364 GFF3365 - Levodione reductase, at 210,155 to 210,892 GFF3365 GFF3366 - hypothetical protein, at 210,889 to 212,151 GFF3366 Position (kb) 210 211Strain fitness (log2 ratio) -2 -1 0 1at 209.269 kb on + strandat 209.269 kb on + strandat 209.270 kb on - strandat 209.270 kb on - strandat 209.270 kb on - strandat 209.424 kb on + strand, within GFF3364at 209.425 kb on - strand, within GFF3364at 209.436 kb on + strand, within GFF3364at 209.642 kb on + strand, within GFF3364at 209.642 kb on + strand, within GFF3364at 209.643 kb on - strand, within GFF3364at 209.872 kb on - strand, within GFF3364at 209.910 kb on + strand, within GFF3364at 209.911 kb on - strand, within GFF3364at 209.911 kb on - strand, within GFF3364at 209.997 kb on - strand, within GFF3364at 209.997 kb on - strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.011 kb on + strand, within GFF3364at 210.109 kb on + strandat 210.110 kb on - strandat 210.110 kb on - strandat 210.265 kb on - strand, within GFF3365at 210.442 kb on - strand, within GFF3365at 210.487 kb on + strand, within GFF3365at 210.488 kb on - strand, within GFF3365at 210.639 kb on + strand, within GFF3365at 210.968 kb on + strandat 210.969 kb on - strandat 211.022 kb on + strand, within GFF3366at 211.035 kb on + strand, within GFF3366at 211.036 kb on - strand, within GFF3366at 211.036 kb on - strand, within GFF3366at 211.036 kb on - strand, within GFF3366at 211.157 kb on + strand, within GFF3366at 211.157 kb on + strand, within GFF3366at 211.158 kb on - strand, within GFF3366at 211.175 kb on + strand, within GFF3366at 211.175 kb on + strand, within GFF3366at 211.176 kb on - strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.583 kb on + strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.667 kb on + strand, within GFF3366at 211.668 kb on - strand, within GFF3366at 211.668 kb on - strand, within GFF3366at 211.683 kb on + strand, within GFF3366at 211.683 kb on + strand, within GFF3366at 211.891 kb on + strand, within GFF3366at 211.891 kb on + strand, within GFF3366at 211.892 kb on - strand, within GFF3366

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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209,269 + -0.1
209,269 + -0.1
209,270 - +1.2
209,270 - +1.0
209,270 - -1.4
209,424 + GFF3364 0.19 -1.9
209,425 - GFF3364 0.19 -0.4
209,436 + GFF3364 0.20 +0.3
209,642 + GFF3364 0.45 +0.7
209,642 + GFF3364 0.45 +0.4
209,643 - GFF3364 0.45 -1.8
209,872 - GFF3364 0.72 -0.5
209,910 + GFF3364 0.76 +0.1
209,911 - GFF3364 0.76 +0.4
209,911 - GFF3364 0.76 +0.6
209,997 - GFF3364 0.87 +0.1
209,997 - GFF3364 0.87 +0.6
210,011 + GFF3364 0.88 -0.3
210,011 + GFF3364 0.88 +0.5
210,011 + GFF3364 0.88 -0.6
210,109 + -1.2
210,110 - +1.7
210,110 - +0.7
210,265 - GFF3365 0.15 -1.3
210,442 - GFF3365 0.39 -0.0
210,487 + GFF3365 0.45 +1.2
210,488 - GFF3365 0.45 -1.3
210,639 + GFF3365 0.66 +0.3
210,968 + +0.9
210,969 - -2.2
211,022 + GFF3366 0.11 +0.7
211,035 + GFF3366 0.12 +0.6
211,036 - GFF3366 0.12 -0.7
211,036 - GFF3366 0.12 -1.3
211,036 - GFF3366 0.12 -0.7
211,157 + GFF3366 0.21 +0.5
211,157 + GFF3366 0.21 -0.1
211,158 - GFF3366 0.21 -1.0
211,175 + GFF3366 0.23 +0.6
211,175 + GFF3366 0.23 -0.0
211,176 - GFF3366 0.23 +0.2
211,334 + GFF3366 0.35 +0.2
211,334 + GFF3366 0.35 -0.1
211,334 + GFF3366 0.35 +1.2
211,334 + GFF3366 0.35 +0.2
211,334 + GFF3366 0.35 -0.5
211,334 + GFF3366 0.35 -0.1
211,335 - GFF3366 0.35 +0.7
211,335 - GFF3366 0.35 -0.0
211,335 - GFF3366 0.35 +1.3
211,335 - GFF3366 0.35 -0.5
211,335 - GFF3366 0.35 +0.1
211,583 + GFF3366 0.55 +0.1
211,659 - GFF3366 0.61 +0.5
211,659 - GFF3366 0.61 +0.6
211,659 - GFF3366 0.61 -0.1
211,659 - GFF3366 0.61 -1.4
211,659 - GFF3366 0.61 +0.4
211,667 + GFF3366 0.62 +1.4
211,668 - GFF3366 0.62 +0.1
211,668 - GFF3366 0.62 +0.9
211,683 + GFF3366 0.63 +0.3
211,683 + GFF3366 0.63 +0.4
211,891 + GFF3366 0.79 +0.1
211,891 + GFF3366 0.79 -0.6
211,892 - GFF3366 0.79 -0.3

Or see this region's nucleotide sequence