Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3360 and GFF3361 are separated by 2 nucleotides GFF3361 and GFF3362 are separated by 108 nucleotides GFF3362 and GFF3363 are separated by 85 nucleotides
GFF3360 - Acetophenone carboxylase delta subunit, at 204,190 to 205,971
GFF3360
GFF3361 - Acetophenone carboxylase gamma subunit, at 205,974 to 207,191
GFF3361
GFF3362 - Acetophenone carboxylase gamma subunit, at 207,300 to 208,040
GFF3362
GFF3363 - HTH-type transcriptional regulator DmlR, at 208,126 to 209,043
GFF3363
Position (kb) 205
206
207
208 Strain fitness (log2 ratio) -2
-1
0
1 at 205.022 kb on + strand, within GFF3360 at 205.022 kb on + strand, within GFF3360 at 205.023 kb on - strand, within GFF3360 at 205.023 kb on - strand, within GFF3360 at 205.023 kb on - strand, within GFF3360 at 205.211 kb on + strand, within GFF3360 at 205.211 kb on + strand, within GFF3360 at 205.211 kb on + strand, within GFF3360 at 205.211 kb on + strand, within GFF3360 at 205.211 kb on + strand, within GFF3360 at 205.212 kb on - strand, within GFF3360 at 205.212 kb on - strand, within GFF3360 at 205.212 kb on - strand, within GFF3360 at 205.369 kb on + strand, within GFF3360 at 205.370 kb on - strand, within GFF3360 at 205.370 kb on - strand, within GFF3360 at 205.370 kb on - strand, within GFF3360 at 205.401 kb on + strand, within GFF3360 at 205.402 kb on - strand, within GFF3360 at 205.677 kb on + strand, within GFF3360 at 205.678 kb on - strand, within GFF3360 at 205.678 kb on - strand, within GFF3360 at 205.805 kb on + strand at 205.805 kb on + strand at 205.805 kb on + strand at 205.814 kb on + strand at 205.814 kb on + strand at 205.815 kb on - strand at 205.815 kb on - strand at 205.820 kb on + strand at 205.976 kb on - strand at 206.069 kb on - strand at 206.069 kb on - strand at 206.069 kb on - strand at 206.128 kb on + strand, within GFF3361 at 206.128 kb on + strand, within GFF3361 at 206.129 kb on - strand, within GFF3361 at 206.323 kb on + strand, within GFF3361 at 206.544 kb on + strand, within GFF3361 at 206.545 kb on - strand, within GFF3361 at 206.545 kb on - strand, within GFF3361 at 206.701 kb on + strand, within GFF3361 at 206.702 kb on - strand, within GFF3361 at 207.074 kb on + strand at 207.124 kb on + strand at 207.124 kb on + strand at 207.124 kb on + strand at 207.125 kb on - strand at 207.125 kb on - strand at 207.127 kb on + strand at 207.127 kb on + strand at 207.127 kb on + strand at 207.127 kb on + strand at 207.127 kb on + strand at 207.128 kb on - strand at 207.128 kb on - strand at 207.128 kb on - strand at 207.128 kb on - strand at 207.128 kb on - strand at 207.232 kb on + strand at 207.284 kb on + strand at 207.301 kb on + strand at 207.340 kb on + strand at 207.340 kb on + strand at 207.340 kb on + strand at 207.340 kb on + strand at 207.340 kb on + strand at 207.340 kb on + strand at 207.341 kb on - strand at 207.341 kb on - strand at 207.341 kb on - strand at 207.341 kb on - strand at 207.395 kb on - strand, within GFF3362 at 207.404 kb on + strand, within GFF3362 at 207.418 kb on + strand, within GFF3362 at 207.418 kb on + strand, within GFF3362 at 207.419 kb on - strand, within GFF3362 at 207.556 kb on + strand, within GFF3362 at 207.564 kb on + strand, within GFF3362 at 207.565 kb on - strand, within GFF3362 at 207.565 kb on - strand, within GFF3362 at 207.589 kb on - strand, within GFF3362 at 208.016 kb on + strand at 208.017 kb on - strand at 208.017 kb on - strand at 208.034 kb on - strand at 208.066 kb on + strand at 208.066 kb on + strand at 208.067 kb on - strand at 208.067 kb on - strand at 208.122 kb on + strand at 208.122 kb on + strand at 208.123 kb on - strand at 208.172 kb on + strand at 208.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 205,022 + GFF3360 0.47 -0.3 205,022 + GFF3360 0.47 -1.3 205,023 - GFF3360 0.47 +0.5 205,023 - GFF3360 0.47 -0.7 205,023 - GFF3360 0.47 -1.4 205,211 + GFF3360 0.57 -0.6 205,211 + GFF3360 0.57 +1.0 205,211 + GFF3360 0.57 +0.6 205,211 + GFF3360 0.57 -0.6 205,211 + GFF3360 0.57 +1.0 205,212 - GFF3360 0.57 +0.9 205,212 - GFF3360 0.57 +0.2 205,212 - GFF3360 0.57 +0.7 205,369 + GFF3360 0.66 -0.4 205,370 - GFF3360 0.66 -0.1 205,370 - GFF3360 0.66 -0.4 205,370 - GFF3360 0.66 -0.4 205,401 + GFF3360 0.68 -0.0 205,402 - GFF3360 0.68 -1.1 205,677 + GFF3360 0.83 -0.6 205,678 - GFF3360 0.84 -0.7 205,678 - GFF3360 0.84 -0.3 205,805 + -0.1 205,805 + -0.2 205,805 + -0.1 205,814 + +0.3 205,814 + +0.0 205,815 - -1.3 205,815 - +0.3 205,820 + +0.2 205,976 - +0.0 206,069 - -0.4 206,069 - -0.1 206,069 - +0.3 206,128 + GFF3361 0.13 -0.0 206,128 + GFF3361 0.13 +0.2 206,129 - GFF3361 0.13 -1.3 206,323 + GFF3361 0.29 -0.2 206,544 + GFF3361 0.47 +0.2 206,545 - GFF3361 0.47 -0.1 206,545 - GFF3361 0.47 -0.2 206,701 + GFF3361 0.60 -0.3 206,702 - GFF3361 0.60 -0.6 207,074 + -0.0 207,124 + +0.5 207,124 + +0.7 207,124 + +0.4 207,125 - -1.0 207,125 - -0.2 207,127 + +0.7 207,127 + +0.7 207,127 + +0.7 207,127 + -0.9 207,127 + +0.7 207,128 - +0.7 207,128 - +0.7 207,128 - -0.5 207,128 - -1.0 207,128 - +0.1 207,232 + +0.4 207,284 + +0.7 207,301 + -0.7 207,340 + +0.0 207,340 + +0.6 207,340 + -0.8 207,340 + +0.3 207,340 + +0.3 207,340 + +0.3 207,341 - -0.8 207,341 - +0.2 207,341 - -1.4 207,341 - +0.9 207,395 - GFF3362 0.13 +1.1 207,404 + GFF3362 0.14 -1.5 207,418 + GFF3362 0.16 +0.2 207,418 + GFF3362 0.16 +0.6 207,419 - GFF3362 0.16 -0.3 207,556 + GFF3362 0.35 +1.2 207,564 + GFF3362 0.36 -0.3 207,565 - GFF3362 0.36 -1.1 207,565 - GFF3362 0.36 -2.4 207,589 - GFF3362 0.39 +0.4 208,016 + -0.7 208,017 - -0.2 208,017 - +0.6 208,034 - -0.0 208,066 + +0.4 208,066 + -1.4 208,067 - +0.2 208,067 - -0.7 208,122 + +1.1 208,122 + -0.2 208,123 - -0.6 208,172 + +0.6 208,173 - +0.5
Or see this region's nucleotide sequence