Strain Fitness in Xanthobacter sp. DMC5 around GFF3333

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3332 and GFF3333 are separated by 12 nucleotidesGFF3333 and GFF3334 overlap by 4 nucleotidesGFF3334 and GFF3335 are separated by 55 nucleotides GFF3332 - Acetophenone carboxylase gamma subunit, at 171,922 to 174,015 GFF3332 GFF3333 - Acetophenone carboxylase delta subunit, at 174,028 to 175,770 GFF3333 GFF3334 - hypothetical protein, at 175,767 to 176,630 GFF3334 GFF3335 - hypothetical protein, at 176,686 to 177,420 GFF3335 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 173.062 kb on + strand, within GFF3332at 173.116 kb on + strand, within GFF3332at 173.117 kb on - strand, within GFF3332at 173.117 kb on - strand, within GFF3332at 173.117 kb on - strand, within GFF3332at 173.117 kb on - strand, within GFF3332at 173.456 kb on - strand, within GFF3332at 173.456 kb on - strand, within GFF3332at 173.456 kb on - strand, within GFF3332at 173.456 kb on - strand, within GFF3332at 173.600 kb on + strand, within GFF3332at 173.689 kb on + strand, within GFF3332at 173.701 kb on + strand, within GFF3332at 173.701 kb on + strand, within GFF3332at 173.701 kb on + strand, within GFF3332at 173.701 kb on + strand, within GFF3332at 173.702 kb on - strand, within GFF3332at 173.707 kb on + strand, within GFF3332at 173.707 kb on + strand, within GFF3332at 173.707 kb on + strand, within GFF3332at 173.708 kb on - strand, within GFF3332at 173.708 kb on - strand, within GFF3332at 173.735 kb on + strand, within GFF3332at 173.735 kb on + strand, within GFF3332at 173.735 kb on + strand, within GFF3332at 173.735 kb on + strand, within GFF3332at 173.843 kb on - strandat 173.843 kb on - strandat 173.843 kb on - strandat 173.843 kb on - strandat 173.843 kb on - strandat 173.845 kb on + strandat 173.865 kb on + strandat 173.866 kb on - strandat 173.881 kb on + strandat 174.115 kb on + strandat 174.115 kb on + strandat 174.116 kb on - strandat 174.348 kb on + strand, within GFF3333at 174.352 kb on + strand, within GFF3333at 174.395 kb on - strand, within GFF3333at 174.395 kb on - strand, within GFF3333at 174.652 kb on + strand, within GFF3333at 174.697 kb on + strand, within GFF3333at 174.697 kb on + strand, within GFF3333at 174.697 kb on + strand, within GFF3333at 174.749 kb on - strand, within GFF3333at 174.749 kb on - strand, within GFF3333at 174.764 kb on - strand, within GFF3333at 174.764 kb on - strand, within GFF3333at 174.764 kb on - strand, within GFF3333at 174.764 kb on - strand, within GFF3333at 174.917 kb on - strand, within GFF3333at 174.917 kb on - strand, within GFF3333at 174.970 kb on + strand, within GFF3333at 174.971 kb on - strand, within GFF3333at 175.072 kb on - strand, within GFF3333at 175.138 kb on - strand, within GFF3333at 175.138 kb on - strand, within GFF3333at 175.159 kb on + strand, within GFF3333at 175.159 kb on + strand, within GFF3333at 175.306 kb on + strand, within GFF3333at 175.307 kb on - strand, within GFF3333at 175.327 kb on + strand, within GFF3333at 175.394 kb on - strand, within GFF3333at 175.441 kb on + strand, within GFF3333at 175.456 kb on + strand, within GFF3333at 175.456 kb on + strand, within GFF3333at 175.672 kb on + strandat 175.673 kb on - strandat 175.673 kb on - strandat 175.854 kb on + strand, within GFF3334at 175.854 kb on + strand, within GFF3334at 175.854 kb on + strand, within GFF3334at 175.855 kb on - strand, within GFF3334at 175.855 kb on - strand, within GFF3334at 175.855 kb on - strand, within GFF3334at 176.114 kb on + strand, within GFF3334at 176.310 kb on + strand, within GFF3334at 176.310 kb on + strand, within GFF3334at 176.310 kb on + strand, within GFF3334at 176.310 kb on + strand, within GFF3334at 176.311 kb on - strand, within GFF3334at 176.418 kb on + strand, within GFF3334at 176.419 kb on - strand, within GFF3334at 176.466 kb on + strand, within GFF3334at 176.466 kb on + strand, within GFF3334at 176.467 kb on - strand, within GFF3334at 176.467 kb on - strand, within GFF3334at 176.493 kb on + strand, within GFF3334at 176.493 kb on + strand, within GFF3334at 176.493 kb on + strand, within GFF3334at 176.494 kb on - strand, within GFF3334at 176.494 kb on - strand, within GFF3334

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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173,062 + GFF3332 0.54 +0.6
173,116 + GFF3332 0.57 +0.3
173,117 - GFF3332 0.57 -0.3
173,117 - GFF3332 0.57 -0.8
173,117 - GFF3332 0.57 +0.4
173,117 - GFF3332 0.57 +0.7
173,456 - GFF3332 0.73 +0.1
173,456 - GFF3332 0.73 -0.1
173,456 - GFF3332 0.73 +0.5
173,456 - GFF3332 0.73 +0.4
173,600 + GFF3332 0.80 -1.0
173,689 + GFF3332 0.84 +0.6
173,701 + GFF3332 0.85 -0.3
173,701 + GFF3332 0.85 +0.9
173,701 + GFF3332 0.85 +0.2
173,701 + GFF3332 0.85 -0.2
173,702 - GFF3332 0.85 +0.7
173,707 + GFF3332 0.85 +0.1
173,707 + GFF3332 0.85 -1.3
173,707 + GFF3332 0.85 +0.9
173,708 - GFF3332 0.85 +0.4
173,708 - GFF3332 0.85 -1.1
173,735 + GFF3332 0.87 -0.4
173,735 + GFF3332 0.87 +0.6
173,735 + GFF3332 0.87 +0.7
173,735 + GFF3332 0.87 +0.4
173,843 - -0.9
173,843 - +0.2
173,843 - +0.6
173,843 - -0.3
173,843 - +0.1
173,845 + -0.6
173,865 + -0.1
173,866 - +0.1
173,881 + -0.6
174,115 + +1.3
174,115 + +0.7
174,116 - +0.1
174,348 + GFF3333 0.18 -0.6
174,352 + GFF3333 0.19 +0.5
174,395 - GFF3333 0.21 +0.9
174,395 - GFF3333 0.21 -0.0
174,652 + GFF3333 0.36 +1.0
174,697 + GFF3333 0.38 -0.2
174,697 + GFF3333 0.38 -1.8
174,697 + GFF3333 0.38 -0.1
174,749 - GFF3333 0.41 -1.1
174,749 - GFF3333 0.41 +0.3
174,764 - GFF3333 0.42 -1.7
174,764 - GFF3333 0.42 +2.1
174,764 - GFF3333 0.42 +0.1
174,764 - GFF3333 0.42 -1.6
174,917 - GFF3333 0.51 -0.0
174,917 - GFF3333 0.51 +0.0
174,970 + GFF3333 0.54 -0.7
174,971 - GFF3333 0.54 -0.9
175,072 - GFF3333 0.60 -1.3
175,138 - GFF3333 0.64 -0.5
175,138 - GFF3333 0.64 +1.3
175,159 + GFF3333 0.65 +0.4
175,159 + GFF3333 0.65 -0.6
175,306 + GFF3333 0.73 -0.1
175,307 - GFF3333 0.73 +1.1
175,327 + GFF3333 0.75 -0.1
175,394 - GFF3333 0.78 -0.3
175,441 + GFF3333 0.81 +0.3
175,456 + GFF3333 0.82 -1.0
175,456 + GFF3333 0.82 +1.0
175,672 + +0.1
175,673 - +0.6
175,673 - +0.3
175,854 + GFF3334 0.10 +1.3
175,854 + GFF3334 0.10 +1.3
175,854 + GFF3334 0.10 -3.1
175,855 - GFF3334 0.10 +0.0
175,855 - GFF3334 0.10 -0.4
175,855 - GFF3334 0.10 +0.3
176,114 + GFF3334 0.40 -1.4
176,310 + GFF3334 0.63 +0.3
176,310 + GFF3334 0.63 +0.5
176,310 + GFF3334 0.63 +0.6
176,310 + GFF3334 0.63 -0.9
176,311 - GFF3334 0.63 -0.2
176,418 + GFF3334 0.75 -0.2
176,419 - GFF3334 0.75 -0.7
176,466 + GFF3334 0.81 +0.5
176,466 + GFF3334 0.81 +0.5
176,467 - GFF3334 0.81 +0.7
176,467 - GFF3334 0.81 +0.5
176,493 + GFF3334 0.84 -1.8
176,493 + GFF3334 0.84 +0.1
176,493 + GFF3334 0.84 -0.2
176,494 - GFF3334 0.84 +0.5
176,494 - GFF3334 0.84 -0.1

Or see this region's nucleotide sequence