Strain Fitness in Xanthobacter sp. DMC5 around GFF332

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF329 and GFF330 are separated by 1 nucleotidesGFF330 and GFF331 overlap by 1 nucleotidesGFF331 and GFF332 are separated by 7 nucleotidesGFF332 and GFF333 overlap by 4 nucleotidesGFF333 and GFF334 are separated by 21 nucleotides GFF329 - hypothetical protein, at 336,574 to 336,954 GFF329 GFF330 - hypothetical protein, at 336,956 to 337,489 GFF330 GFF331 - hypothetical protein, at 337,489 to 337,911 GFF331 GFF332 - hypothetical protein, at 337,919 to 341,665 GFF332 GFF333 - hypothetical protein, at 341,662 to 342,087 GFF333 GFF334 - hypothetical protein, at 342,109 to 343,536 GFF334 Position (kb) 337 338 339 340 341 342Strain fitness (log2 ratio) -2 -1 0 1 2at 337.237 kb on + strand, within GFF330at 337.262 kb on + strand, within GFF330at 337.283 kb on + strand, within GFF330at 337.317 kb on - strand, within GFF330at 337.519 kb on + strandat 337.533 kb on + strand, within GFF331at 337.534 kb on - strand, within GFF331at 338.378 kb on + strand, within GFF332at 338.378 kb on + strand, within GFF332at 338.378 kb on + strand, within GFF332at 338.378 kb on + strand, within GFF332at 338.379 kb on - strand, within GFF332at 338.379 kb on - strand, within GFF332at 338.435 kb on + strand, within GFF332at 338.435 kb on + strand, within GFF332at 338.435 kb on + strand, within GFF332at 338.436 kb on - strand, within GFF332at 338.436 kb on - strand, within GFF332at 338.462 kb on + strand, within GFF332at 338.463 kb on - strand, within GFF332at 338.486 kb on + strand, within GFF332at 338.486 kb on + strand, within GFF332at 338.487 kb on - strand, within GFF332at 338.504 kb on + strand, within GFF332at 338.504 kb on + strand, within GFF332at 338.504 kb on + strand, within GFF332at 338.504 kb on + strand, within GFF332at 338.506 kb on + strand, within GFF332at 338.540 kb on + strand, within GFF332at 338.540 kb on + strand, within GFF332at 338.619 kb on + strand, within GFF332at 338.620 kb on - strand, within GFF332at 338.620 kb on - strand, within GFF332at 338.620 kb on - strand, within GFF332at 338.633 kb on + strand, within GFF332at 338.634 kb on - strand, within GFF332at 338.634 kb on - strand, within GFF332at 338.675 kb on + strand, within GFF332at 338.675 kb on + strand, within GFF332at 338.676 kb on - strand, within GFF332at 338.807 kb on + strand, within GFF332at 338.808 kb on - strand, within GFF332at 338.864 kb on + strand, within GFF332at 338.864 kb on + strand, within GFF332at 338.990 kb on + strand, within GFF332at 338.990 kb on + strand, within GFF332at 338.991 kb on - strand, within GFF332at 339.272 kb on - strand, within GFF332at 339.278 kb on + strand, within GFF332at 339.278 kb on + strand, within GFF332at 339.278 kb on + strand, within GFF332at 339.279 kb on - strand, within GFF332at 339.279 kb on - strand, within GFF332at 339.279 kb on - strand, within GFF332at 339.279 kb on - strand, within GFF332at 339.279 kb on - strand, within GFF332at 339.279 kb on - strand, within GFF332at 339.368 kb on + strand, within GFF332at 339.368 kb on + strand, within GFF332at 339.368 kb on + strand, within GFF332at 339.369 kb on - strand, within GFF332at 339.546 kb on - strand, within GFF332at 339.630 kb on - strand, within GFF332at 339.630 kb on - strand, within GFF332at 339.702 kb on - strand, within GFF332at 339.722 kb on + strand, within GFF332at 339.738 kb on - strand, within GFF332at 339.920 kb on + strand, within GFF332at 340.358 kb on + strand, within GFF332at 340.377 kb on - strand, within GFF332at 340.887 kb on - strand, within GFF332at 340.997 kb on + strand, within GFF332at 340.997 kb on + strand, within GFF332at 340.997 kb on + strand, within GFF332at 340.997 kb on + strand, within GFF332at 340.998 kb on - strand, within GFF332at 340.998 kb on - strand, within GFF332at 340.998 kb on - strand, within GFF332at 340.998 kb on - strand, within GFF332at 340.998 kb on - strand, within GFF332at 340.998 kb on - strand, within GFF332at 341.047 kb on + strand, within GFF332at 341.047 kb on + strand, within GFF332at 341.047 kb on + strand, within GFF332at 341.048 kb on - strand, within GFF332at 341.070 kb on - strand, within GFF332at 341.206 kb on + strand, within GFF332at 341.207 kb on - strand, within GFF332at 341.260 kb on - strand, within GFF332at 341.260 kb on - strand, within GFF332at 341.381 kb on + strandat 341.381 kb on + strandat 341.382 kb on - strandat 341.420 kb on + strandat 341.456 kb on + strandat 341.484 kb on - strandat 341.484 kb on - strandat 341.495 kb on + strandat 341.495 kb on + strandat 341.569 kb on - strandat 341.809 kb on + strand, within GFF333at 341.809 kb on + strand, within GFF333at 341.809 kb on + strand, within GFF333at 341.809 kb on + strand, within GFF333at 341.810 kb on - strand, within GFF333at 341.810 kb on - strand, within GFF333at 341.810 kb on - strand, within GFF333at 341.810 kb on - strand, within GFF333at 341.894 kb on + strand, within GFF333at 342.127 kb on + strandat 342.128 kb on - strandat 342.128 kb on - strandat 342.128 kb on - strandat 342.128 kb on - strandat 342.267 kb on + strand, within GFF334at 342.267 kb on + strand, within GFF334at 342.268 kb on - strand, within GFF334at 342.287 kb on - strand, within GFF334at 342.287 kb on - strand, within GFF334at 342.287 kb on - strand, within GFF334at 342.322 kb on + strand, within GFF334at 342.322 kb on + strand, within GFF334at 342.322 kb on + strand, within GFF334at 342.323 kb on - strand, within GFF334at 342.323 kb on - strand, within GFF334at 342.334 kb on + strand, within GFF334at 342.364 kb on + strand, within GFF334at 342.365 kb on - strand, within GFF334at 342.365 kb on - strand, within GFF334at 342.365 kb on - strand, within GFF334at 342.426 kb on + strand, within GFF334at 342.427 kb on - strand, within GFF334at 342.427 kb on - strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.430 kb on + strand, within GFF334at 342.431 kb on - strand, within GFF334at 342.431 kb on - strand, within GFF334at 342.431 kb on - strand, within GFF334at 342.431 kb on - strand, within GFF334at 342.491 kb on - strand, within GFF334at 342.604 kb on + strand, within GFF334

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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337,237 + GFF330 0.53 -0.6
337,262 + GFF330 0.57 +1.1
337,283 + GFF330 0.61 +0.2
337,317 - GFF330 0.68 -0.2
337,519 + +0.5
337,533 + GFF331 0.10 -0.0
337,534 - GFF331 0.11 +0.4
338,378 + GFF332 0.12 +0.5
338,378 + GFF332 0.12 +0.5
338,378 + GFF332 0.12 -0.1
338,378 + GFF332 0.12 -0.5
338,379 - GFF332 0.12 +0.3
338,379 - GFF332 0.12 -0.1
338,435 + GFF332 0.14 +1.3
338,435 + GFF332 0.14 +1.1
338,435 + GFF332 0.14 +0.1
338,436 - GFF332 0.14 +0.0
338,436 - GFF332 0.14 +0.6
338,462 + GFF332 0.14 -0.1
338,463 - GFF332 0.15 +0.6
338,486 + GFF332 0.15 +0.0
338,486 + GFF332 0.15 -0.2
338,487 - GFF332 0.15 -0.1
338,504 + GFF332 0.16 +0.1
338,504 + GFF332 0.16 +2.0
338,504 + GFF332 0.16 -0.1
338,504 + GFF332 0.16 -0.3
338,506 + GFF332 0.16 +0.9
338,540 + GFF332 0.17 -0.5
338,540 + GFF332 0.17 +2.4
338,619 + GFF332 0.19 +0.8
338,620 - GFF332 0.19 -0.7
338,620 - GFF332 0.19 -0.0
338,620 - GFF332 0.19 +0.9
338,633 + GFF332 0.19 -1.5
338,634 - GFF332 0.19 -0.1
338,634 - GFF332 0.19 -1.4
338,675 + GFF332 0.20 +1.4
338,675 + GFF332 0.20 +0.1
338,676 - GFF332 0.20 -1.3
338,807 + GFF332 0.24 -0.5
338,808 - GFF332 0.24 -0.2
338,864 + GFF332 0.25 +0.8
338,864 + GFF332 0.25 +0.0
338,990 + GFF332 0.29 -1.9
338,990 + GFF332 0.29 -0.6
338,991 - GFF332 0.29 +0.1
339,272 - GFF332 0.36 -0.1
339,278 + GFF332 0.36 -0.3
339,278 + GFF332 0.36 -0.1
339,278 + GFF332 0.36 +2.7
339,279 - GFF332 0.36 +0.2
339,279 - GFF332 0.36 -0.4
339,279 - GFF332 0.36 +0.5
339,279 - GFF332 0.36 +1.1
339,279 - GFF332 0.36 -0.7
339,279 - GFF332 0.36 +0.1
339,368 + GFF332 0.39 -0.2
339,368 + GFF332 0.39 +0.2
339,368 + GFF332 0.39 +1.0
339,369 - GFF332 0.39 -0.4
339,546 - GFF332 0.43 -0.9
339,630 - GFF332 0.46 -1.4
339,630 - GFF332 0.46 +0.5
339,702 - GFF332 0.48 -0.9
339,722 + GFF332 0.48 -0.5
339,738 - GFF332 0.49 +0.7
339,920 + GFF332 0.53 +0.8
340,358 + GFF332 0.65 -0.9
340,377 - GFF332 0.66 -0.2
340,887 - GFF332 0.79 -0.1
340,997 + GFF332 0.82 -0.3
340,997 + GFF332 0.82 +0.1
340,997 + GFF332 0.82 +0.4
340,997 + GFF332 0.82 -0.4
340,998 - GFF332 0.82 -0.3
340,998 - GFF332 0.82 -0.9
340,998 - GFF332 0.82 -0.6
340,998 - GFF332 0.82 -0.5
340,998 - GFF332 0.82 +0.3
340,998 - GFF332 0.82 -0.6
341,047 + GFF332 0.83 -0.3
341,047 + GFF332 0.83 +0.1
341,047 + GFF332 0.83 -0.9
341,048 - GFF332 0.84 +1.0
341,070 - GFF332 0.84 -1.4
341,206 + GFF332 0.88 -0.5
341,207 - GFF332 0.88 +0.9
341,260 - GFF332 0.89 -0.7
341,260 - GFF332 0.89 +1.0
341,381 + -0.3
341,381 + +1.2
341,382 - -1.6
341,420 + +0.3
341,456 + +1.1
341,484 - +0.2
341,484 - -0.1
341,495 + -0.2
341,495 + +0.7
341,569 - +1.2
341,809 + GFF333 0.35 +0.6
341,809 + GFF333 0.35 +0.4
341,809 + GFF333 0.35 -1.8
341,809 + GFF333 0.35 +0.0
341,810 - GFF333 0.35 +0.2
341,810 - GFF333 0.35 +0.5
341,810 - GFF333 0.35 -1.1
341,810 - GFF333 0.35 -0.5
341,894 + GFF333 0.54 +1.1
342,127 + +2.0
342,128 - +0.1
342,128 - -1.2
342,128 - +0.3
342,128 - +0.7
342,267 + GFF334 0.11 +0.4
342,267 + GFF334 0.11 -0.3
342,268 - GFF334 0.11 -1.4
342,287 - GFF334 0.12 +0.8
342,287 - GFF334 0.12 +1.7
342,287 - GFF334 0.12 +0.5
342,322 + GFF334 0.15 +1.1
342,322 + GFF334 0.15 +0.6
342,322 + GFF334 0.15 +0.3
342,323 - GFF334 0.15 -0.3
342,323 - GFF334 0.15 -0.7
342,334 + GFF334 0.16 +0.1
342,364 + GFF334 0.18 -1.0
342,365 - GFF334 0.18 -2.3
342,365 - GFF334 0.18 +0.7
342,365 - GFF334 0.18 +0.7
342,426 + GFF334 0.22 -0.3
342,427 - GFF334 0.22 -0.6
342,427 - GFF334 0.22 -0.2
342,430 + GFF334 0.22 +0.8
342,430 + GFF334 0.22 +1.4
342,430 + GFF334 0.22 +0.6
342,430 + GFF334 0.22 -0.5
342,430 + GFF334 0.22 +0.3
342,430 + GFF334 0.22 +0.6
342,430 + GFF334 0.22 +0.3
342,430 + GFF334 0.22 +1.6
342,431 - GFF334 0.23 +0.0
342,431 - GFF334 0.23 -0.1
342,431 - GFF334 0.23 +1.1
342,431 - GFF334 0.23 -1.2
342,491 - GFF334 0.27 +0.6
342,604 + GFF334 0.35 -0.8

Or see this region's nucleotide sequence