Strain Fitness in Xanthobacter sp. DMC5 around GFF3317

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3315 and GFF3316 are separated by 1 nucleotidesGFF3316 and GFF3317 are separated by 22 nucleotidesGFF3317 and GFF3318 overlap by 1 nucleotides GFF3315 - Lactose transport system permease protein LacF, at 155,510 to 156,469 GFF3315 GFF3316 - Diacetylchitobiose uptake system permease protein NgcG, at 156,471 to 157,331 GFF3316 GFF3317 - Oligosaccharides import ATP-binding protein MsmX, at 157,354 to 158,511 GFF3317 GFF3318 - D-apiose dehydrogenase, at 158,511 to 159,530 GFF3318 Position (kb) 157 158 159Strain fitness (log2 ratio) -1 0 1at 156.558 kb on + strand, within GFF3316at 156.559 kb on - strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.567 kb on + strand, within GFF3316at 156.568 kb on - strand, within GFF3316at 156.568 kb on - strand, within GFF3316at 156.568 kb on - strand, within GFF3316at 156.568 kb on - strand, within GFF3316at 156.639 kb on + strand, within GFF3316at 156.639 kb on + strand, within GFF3316at 156.639 kb on + strand, within GFF3316at 156.639 kb on + strand, within GFF3316at 156.640 kb on - strand, within GFF3316at 156.640 kb on - strand, within GFF3316at 156.708 kb on + strand, within GFF3316at 156.708 kb on + strand, within GFF3316at 156.709 kb on - strand, within GFF3316at 156.709 kb on - strand, within GFF3316at 156.795 kb on + strand, within GFF3316at 156.823 kb on - strand, within GFF3316at 156.880 kb on - strand, within GFF3316at 156.897 kb on + strand, within GFF3316at 156.897 kb on + strand, within GFF3316at 156.898 kb on - strand, within GFF3316at 156.898 kb on - strand, within GFF3316at 156.900 kb on - strand, within GFF3316at 156.906 kb on + strand, within GFF3316at 156.906 kb on + strand, within GFF3316at 156.906 kb on + strand, within GFF3316at 156.936 kb on + strand, within GFF3316at 156.938 kb on + strand, within GFF3316at 156.939 kb on - strand, within GFF3316at 156.939 kb on - strand, within GFF3316at 156.966 kb on + strand, within GFF3316at 156.966 kb on + strand, within GFF3316at 156.967 kb on - strand, within GFF3316at 157.276 kb on - strandat 157.609 kb on + strand, within GFF3317at 157.609 kb on + strand, within GFF3317at 157.609 kb on + strand, within GFF3317at 157.609 kb on + strand, within GFF3317at 157.610 kb on - strand, within GFF3317at 157.610 kb on - strand, within GFF3317at 157.610 kb on - strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.924 kb on + strand, within GFF3317at 157.925 kb on - strand, within GFF3317at 157.925 kb on - strand, within GFF3317at 157.925 kb on - strand, within GFF3317at 158.023 kb on + strand, within GFF3317at 158.024 kb on - strand, within GFF3317at 158.024 kb on - strand, within GFF3317at 158.901 kb on + strand, within GFF3318at 158.901 kb on + strand, within GFF3318at 158.901 kb on + strand, within GFF3318at 158.901 kb on + strand, within GFF3318at 158.901 kb on + strand, within GFF3318at 158.901 kb on + strand, within GFF3318at 158.902 kb on - strand, within GFF3318at 158.905 kb on - strand, within GFF3318at 159.351 kb on + strand, within GFF3318at 159.351 kb on + strand, within GFF3318at 159.351 kb on + strand, within GFF3318at 159.351 kb on + strand, within GFF3318at 159.352 kb on - strand, within GFF3318at 159.352 kb on - strand, within GFF3318at 159.369 kb on + strand, within GFF3318at 159.369 kb on + strand, within GFF3318at 159.370 kb on - strand, within GFF3318at 159.370 kb on - strand, within GFF3318at 159.381 kb on + strand, within GFF3318at 159.381 kb on + strand, within GFF3318at 159.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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156,558 + GFF3316 0.10 -0.2
156,559 - GFF3316 0.10 +0.3
156,567 + GFF3316 0.11 +0.2
156,567 + GFF3316 0.11 -0.2
156,567 + GFF3316 0.11 +0.9
156,567 + GFF3316 0.11 -0.1
156,567 + GFF3316 0.11 -0.8
156,568 - GFF3316 0.11 +0.4
156,568 - GFF3316 0.11 +1.4
156,568 - GFF3316 0.11 +0.4
156,568 - GFF3316 0.11 -0.6
156,639 + GFF3316 0.20 -1.0
156,639 + GFF3316 0.20 -0.1
156,639 + GFF3316 0.20 -0.6
156,639 + GFF3316 0.20 +0.2
156,640 - GFF3316 0.20 +0.5
156,640 - GFF3316 0.20 -0.4
156,708 + GFF3316 0.28 +0.2
156,708 + GFF3316 0.28 +1.0
156,709 - GFF3316 0.28 -1.3
156,709 - GFF3316 0.28 -0.6
156,795 + GFF3316 0.38 +0.1
156,823 - GFF3316 0.41 +0.4
156,880 - GFF3316 0.48 -0.6
156,897 + GFF3316 0.49 -0.0
156,897 + GFF3316 0.49 +0.5
156,898 - GFF3316 0.50 -0.3
156,898 - GFF3316 0.50 -0.6
156,900 - GFF3316 0.50 -0.2
156,906 + GFF3316 0.51 +0.3
156,906 + GFF3316 0.51 +1.0
156,906 + GFF3316 0.51 -0.7
156,936 + GFF3316 0.54 -0.3
156,938 + GFF3316 0.54 -0.1
156,939 - GFF3316 0.54 -1.5
156,939 - GFF3316 0.54 +0.3
156,966 + GFF3316 0.57 +0.7
156,966 + GFF3316 0.57 +0.3
156,967 - GFF3316 0.58 +0.3
157,276 - +0.1
157,609 + GFF3317 0.22 -1.0
157,609 + GFF3317 0.22 +0.1
157,609 + GFF3317 0.22 -0.1
157,609 + GFF3317 0.22 -0.5
157,610 - GFF3317 0.22 -0.1
157,610 - GFF3317 0.22 +1.3
157,610 - GFF3317 0.22 +1.1
157,924 + GFF3317 0.49 +0.5
157,924 + GFF3317 0.49 +1.1
157,924 + GFF3317 0.49 +0.1
157,924 + GFF3317 0.49 -0.9
157,924 + GFF3317 0.49 -0.4
157,924 + GFF3317 0.49 -0.3
157,925 - GFF3317 0.49 +0.9
157,925 - GFF3317 0.49 +0.3
157,925 - GFF3317 0.49 +0.7
158,023 + GFF3317 0.58 +0.4
158,024 - GFF3317 0.58 +0.1
158,024 - GFF3317 0.58 +1.1
158,901 + GFF3318 0.38 -0.2
158,901 + GFF3318 0.38 -0.3
158,901 + GFF3318 0.38 -1.3
158,901 + GFF3318 0.38 -0.4
158,901 + GFF3318 0.38 -1.4
158,901 + GFF3318 0.38 -0.4
158,902 - GFF3318 0.38 +0.1
158,905 - GFF3318 0.39 -0.0
159,351 + GFF3318 0.82 +1.0
159,351 + GFF3318 0.82 -0.9
159,351 + GFF3318 0.82 +0.4
159,351 + GFF3318 0.82 -0.3
159,352 - GFF3318 0.82 +0.4
159,352 - GFF3318 0.82 -0.5
159,369 + GFF3318 0.84 +0.6
159,369 + GFF3318 0.84 +0.3
159,370 - GFF3318 0.84 +0.1
159,370 - GFF3318 0.84 -0.9
159,381 + GFF3318 0.85 -0.2
159,381 + GFF3318 0.85 -0.8
159,487 - +0.4

Or see this region's nucleotide sequence