Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3311 and GFF3312 are separated by 2 nucleotides GFF3312 and GFF3313 are separated by 11 nucleotides GFF3313 and GFF3314 are separated by 178 nucleotides
GFF3311 - HTH-type transcriptional regulator NorG, at 149,976 to 151,391
GFF3311
GFF3312 - 4-sulfomuconolactone hydrolase, at 151,394 to 152,272
GFF3312
GFF3313 - L-arabonate dehydratase, at 152,284 to 154,005
GFF3313
GFF3314 - hypothetical protein, at 154,184 to 155,506
GFF3314
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 151.407 kb on + strand at 151.407 kb on + strand at 151.585 kb on - strand, within GFF3312 at 151.633 kb on - strand, within GFF3312 at 151.735 kb on + strand, within GFF3312 at 151.736 kb on - strand, within GFF3312 at 151.799 kb on + strand, within GFF3312 at 151.859 kb on + strand, within GFF3312 at 151.859 kb on + strand, within GFF3312 at 151.860 kb on - strand, within GFF3312 at 152.128 kb on - strand, within GFF3312 at 152.357 kb on + strand at 152.357 kb on + strand at 152.357 kb on + strand at 152.633 kb on + strand, within GFF3313 at 152.634 kb on - strand, within GFF3313 at 152.634 kb on - strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.039 kb on + strand, within GFF3313 at 153.040 kb on - strand, within GFF3313 at 153.040 kb on - strand, within GFF3313 at 153.040 kb on - strand, within GFF3313 at 153.040 kb on - strand, within GFF3313 at 153.041 kb on + strand, within GFF3313 at 153.041 kb on + strand, within GFF3313 at 153.042 kb on - strand, within GFF3313 at 153.042 kb on - strand, within GFF3313 at 153.121 kb on + strand, within GFF3313 at 153.122 kb on - strand, within GFF3313 at 153.612 kb on - strand, within GFF3313 at 153.833 kb on + strand at 153.842 kb on + strand at 153.842 kb on + strand at 153.843 kb on - strand at 153.947 kb on + strand at 154.085 kb on + strand at 154.086 kb on - strand at 154.086 kb on - strand at 154.157 kb on + strand at 154.236 kb on + strand at 154.393 kb on + strand, within GFF3314 at 154.439 kb on + strand, within GFF3314 at 154.440 kb on - strand, within GFF3314 at 154.440 kb on - strand, within GFF3314 at 154.440 kb on - strand, within GFF3314 at 154.440 kb on - strand, within GFF3314 at 154.490 kb on + strand, within GFF3314 at 154.490 kb on + strand, within GFF3314 at 154.490 kb on + strand, within GFF3314 at 154.491 kb on - strand, within GFF3314 at 154.491 kb on - strand, within GFF3314 at 154.491 kb on - strand, within GFF3314 at 154.550 kb on + strand, within GFF3314 at 154.551 kb on - strand, within GFF3314 at 154.614 kb on - strand, within GFF3314 at 154.614 kb on - strand, within GFF3314 at 154.634 kb on + strand, within GFF3314 at 154.635 kb on - strand, within GFF3314 at 154.635 kb on - strand, within GFF3314 at 154.636 kb on + strand, within GFF3314 at 154.637 kb on - strand, within GFF3314 at 154.637 kb on - strand, within GFF3314 at 154.650 kb on - strand, within GFF3314 at 154.652 kb on + strand, within GFF3314 at 154.653 kb on - strand, within GFF3314 at 154.850 kb on + strand, within GFF3314 at 154.850 kb on + strand, within GFF3314 at 154.851 kb on - strand, within GFF3314 at 154.944 kb on - strand, within GFF3314 at 154.944 kb on - strand, within GFF3314 at 154.988 kb on + strand, within GFF3314 at 154.988 kb on + strand, within GFF3314 at 154.994 kb on + strand, within GFF3314 at 154.994 kb on + strand, within GFF3314 at 154.994 kb on + strand, within GFF3314 at 154.994 kb on + strand, within GFF3314 at 154.995 kb on - strand, within GFF3314 at 154.995 kb on - strand, within GFF3314 at 154.995 kb on - strand, within GFF3314
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 151,407 + -1.3 151,407 + -0.1 151,585 - GFF3312 0.22 -0.1 151,633 - GFF3312 0.27 +0.8 151,735 + GFF3312 0.39 +0.4 151,736 - GFF3312 0.39 -0.3 151,799 + GFF3312 0.46 -0.5 151,859 + GFF3312 0.53 -0.0 151,859 + GFF3312 0.53 +0.3 151,860 - GFF3312 0.53 -0.4 152,128 - GFF3312 0.84 -0.9 152,357 + -0.7 152,357 + +0.2 152,357 + -0.3 152,633 + GFF3313 0.20 +0.3 152,634 - GFF3313 0.20 -0.6 152,634 - GFF3313 0.20 +1.4 153,039 + GFF3313 0.44 -0.4 153,039 + GFF3313 0.44 -0.0 153,039 + GFF3313 0.44 -0.9 153,039 + GFF3313 0.44 -0.5 153,039 + GFF3313 0.44 -1.2 153,040 - GFF3313 0.44 -0.9 153,040 - GFF3313 0.44 -0.6 153,040 - GFF3313 0.44 +0.5 153,040 - GFF3313 0.44 -1.0 153,041 + GFF3313 0.44 -1.3 153,041 + GFF3313 0.44 +0.1 153,042 - GFF3313 0.44 +0.3 153,042 - GFF3313 0.44 +0.4 153,121 + GFF3313 0.49 +0.1 153,122 - GFF3313 0.49 -1.2 153,612 - GFF3313 0.77 -1.2 153,833 + +0.1 153,842 + +0.1 153,842 + -0.2 153,843 - -1.1 153,947 + -0.7 154,085 + -2.3 154,086 - +0.1 154,086 - -0.2 154,157 + -1.2 154,236 + +1.4 154,393 + GFF3314 0.16 -0.6 154,439 + GFF3314 0.19 -1.3 154,440 - GFF3314 0.19 +1.2 154,440 - GFF3314 0.19 +0.1 154,440 - GFF3314 0.19 -0.5 154,440 - GFF3314 0.19 -1.2 154,490 + GFF3314 0.23 +0.1 154,490 + GFF3314 0.23 +0.2 154,490 + GFF3314 0.23 -0.3 154,491 - GFF3314 0.23 -1.3 154,491 - GFF3314 0.23 +0.4 154,491 - GFF3314 0.23 +0.1 154,550 + GFF3314 0.28 -0.9 154,551 - GFF3314 0.28 -1.0 154,614 - GFF3314 0.33 +0.6 154,614 - GFF3314 0.33 +0.2 154,634 + GFF3314 0.34 +0.1 154,635 - GFF3314 0.34 -0.4 154,635 - GFF3314 0.34 -0.1 154,636 + GFF3314 0.34 -0.0 154,637 - GFF3314 0.34 -0.0 154,637 - GFF3314 0.34 -0.2 154,650 - GFF3314 0.35 +0.7 154,652 + GFF3314 0.35 -1.1 154,653 - GFF3314 0.35 +0.3 154,850 + GFF3314 0.50 +0.3 154,850 + GFF3314 0.50 -1.1 154,851 - GFF3314 0.50 -0.2 154,944 - GFF3314 0.57 -0.2 154,944 - GFF3314 0.57 +1.3 154,988 + GFF3314 0.61 -0.6 154,988 + GFF3314 0.61 -1.0 154,994 + GFF3314 0.61 +0.1 154,994 + GFF3314 0.61 +0.2 154,994 + GFF3314 0.61 -0.1 154,994 + GFF3314 0.61 -3.1 154,995 - GFF3314 0.61 +1.5 154,995 - GFF3314 0.61 -1.3 154,995 - GFF3314 0.61 -0.7
Or see this region's nucleotide sequence