Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3307 and GFF3308 are separated by 85 nucleotides GFF3308 and GFF3309 are separated by 85 nucleotides GFF3309 and GFF3310 are separated by 49 nucleotides
GFF3307 - hypothetical protein, at 145,302 to 146,303
GFF3307
GFF3308 - hypothetical protein, at 146,389 to 147,102
GFF3308
GFF3309 - hypothetical protein, at 147,188 to 148,417
GFF3309
GFF3310 - 3-hydroxy-3-methylglutaryl-coenzyme A reductase, at 148,467 to 149,750
GFF3310
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.346 kb on + strand at 146.346 kb on + strand at 146.346 kb on + strand at 146.347 kb on - strand at 146.803 kb on + strand, within GFF3308 at 146.803 kb on + strand, within GFF3308 at 146.839 kb on + strand, within GFF3308 at 146.839 kb on + strand, within GFF3308 at 146.840 kb on - strand, within GFF3308 at 146.840 kb on - strand, within GFF3308 at 146.840 kb on - strand, within GFF3308 at 146.840 kb on - strand, within GFF3308 at 146.840 kb on - strand, within GFF3308 at 146.929 kb on + strand, within GFF3308 at 146.929 kb on + strand, within GFF3308 at 146.929 kb on + strand, within GFF3308 at 146.930 kb on - strand, within GFF3308 at 147.047 kb on - strand at 147.268 kb on - strand at 147.268 kb on - strand at 147.268 kb on - strand at 147.318 kb on + strand, within GFF3309 at 147.318 kb on + strand, within GFF3309 at 147.318 kb on + strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.319 kb on - strand, within GFF3309 at 147.454 kb on - strand, within GFF3309 at 147.472 kb on - strand, within GFF3309 at 147.565 kb on - strand, within GFF3309 at 147.876 kb on + strand, within GFF3309 at 147.960 kb on + strand, within GFF3309 at 147.961 kb on - strand, within GFF3309 at 147.961 kb on - strand, within GFF3309 at 147.961 kb on - strand, within GFF3309 at 148.492 kb on - strand at 148.558 kb on + strand at 148.585 kb on + strand at 148.834 kb on + strand, within GFF3310 at 148.834 kb on + strand, within GFF3310 at 148.834 kb on + strand, within GFF3310 at 148.835 kb on - strand, within GFF3310 at 148.835 kb on - strand, within GFF3310 at 148.835 kb on - strand, within GFF3310 at 148.850 kb on + strand, within GFF3310 at 148.850 kb on + strand, within GFF3310 at 148.850 kb on + strand, within GFF3310 at 148.851 kb on - strand, within GFF3310 at 148.851 kb on - strand, within GFF3310 at 148.853 kb on - strand, within GFF3310 at 148.853 kb on - strand, within GFF3310 at 148.999 kb on + strand, within GFF3310 at 148.999 kb on + strand, within GFF3310 at 149.051 kb on + strand, within GFF3310 at 149.110 kb on + strand, within GFF3310 at 149.111 kb on - strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.225 kb on + strand, within GFF3310 at 149.226 kb on - strand, within GFF3310
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 146,346 + +1.1 146,346 + +0.9 146,346 + -0.7 146,347 - +0.1 146,803 + GFF3308 0.58 -1.3 146,803 + GFF3308 0.58 -0.7 146,839 + GFF3308 0.63 +0.1 146,839 + GFF3308 0.63 +0.3 146,840 - GFF3308 0.63 -0.3 146,840 - GFF3308 0.63 -0.9 146,840 - GFF3308 0.63 +1.5 146,840 - GFF3308 0.63 -1.1 146,840 - GFF3308 0.63 -1.1 146,929 + GFF3308 0.76 -1.3 146,929 + GFF3308 0.76 -1.4 146,929 + GFF3308 0.76 -1.1 146,930 - GFF3308 0.76 +0.5 147,047 - -0.6 147,268 - -1.1 147,268 - -0.4 147,268 - +0.9 147,318 + GFF3309 0.11 +0.1 147,318 + GFF3309 0.11 -0.4 147,318 + GFF3309 0.11 +0.1 147,319 - GFF3309 0.11 -1.6 147,319 - GFF3309 0.11 -1.1 147,319 - GFF3309 0.11 +1.6 147,319 - GFF3309 0.11 +1.7 147,319 - GFF3309 0.11 -0.4 147,319 - GFF3309 0.11 -2.7 147,319 - GFF3309 0.11 -0.8 147,319 - GFF3309 0.11 +0.4 147,319 - GFF3309 0.11 +0.1 147,454 - GFF3309 0.22 -0.5 147,472 - GFF3309 0.23 -1.0 147,565 - GFF3309 0.31 +0.7 147,876 + GFF3309 0.56 +0.7 147,960 + GFF3309 0.63 +0.7 147,961 - GFF3309 0.63 -1.6 147,961 - GFF3309 0.63 -1.0 147,961 - GFF3309 0.63 +0.2 148,492 - -0.2 148,558 + +0.5 148,585 + -0.6 148,834 + GFF3310 0.29 +0.3 148,834 + GFF3310 0.29 -0.2 148,834 + GFF3310 0.29 -0.9 148,835 - GFF3310 0.29 -0.8 148,835 - GFF3310 0.29 +0.3 148,835 - GFF3310 0.29 -1.2 148,850 + GFF3310 0.30 +0.7 148,850 + GFF3310 0.30 +0.4 148,850 + GFF3310 0.30 +1.1 148,851 - GFF3310 0.30 +0.8 148,851 - GFF3310 0.30 +0.1 148,853 - GFF3310 0.30 +0.5 148,853 - GFF3310 0.30 +0.0 148,999 + GFF3310 0.41 +0.6 148,999 + GFF3310 0.41 +2.1 149,051 + GFF3310 0.45 +0.1 149,110 + GFF3310 0.50 -0.5 149,111 - GFF3310 0.50 +0.2 149,225 + GFF3310 0.59 -0.9 149,225 + GFF3310 0.59 +1.1 149,225 + GFF3310 0.59 -0.7 149,225 + GFF3310 0.59 -0.8 149,225 + GFF3310 0.59 +0.7 149,226 - GFF3310 0.59 +0.0
Or see this region's nucleotide sequence