Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3302 and GFF3303 are separated by 12 nucleotides GFF3303 and GFF3304 are separated by 33 nucleotides
GFF3302 - Sialic acid TRAP transporter permease protein SiaT, at 139,176 to 141,038
GFF3302
GFF3303 - D-galactarolactone cycloisomerase, at 141,051 to 142,190
GFF3303
GFF3304 - Glycerate dehydrogenase, at 142,224 to 143,192
GFF3304
GFF3305 - Ureidoglycolate lyase, at 143,182 to 144,084
GFF3305
Position (kb) 141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 140.055 kb on + strand, within GFF3302 at 140.055 kb on + strand, within GFF3302 at 140.055 kb on + strand, within GFF3302 at 140.056 kb on - strand, within GFF3302 at 140.056 kb on - strand, within GFF3302 at 140.056 kb on - strand, within GFF3302 at 140.056 kb on - strand, within GFF3302 at 140.076 kb on + strand, within GFF3302 at 140.076 kb on + strand, within GFF3302 at 140.077 kb on - strand, within GFF3302 at 140.510 kb on - strand, within GFF3302 at 140.511 kb on + strand, within GFF3302 at 140.538 kb on + strand, within GFF3302 at 140.539 kb on - strand, within GFF3302 at 140.729 kb on + strand, within GFF3302 at 140.842 kb on - strand, within GFF3302 at 140.908 kb on - strand at 140.968 kb on - strand at 141.058 kb on + strand at 141.059 kb on - strand at 141.059 kb on - strand at 141.059 kb on - strand at 141.059 kb on - strand at 141.059 kb on - strand at 141.059 kb on - strand at 141.167 kb on - strand, within GFF3303 at 141.167 kb on - strand, within GFF3303 at 141.434 kb on + strand, within GFF3303 at 141.435 kb on - strand, within GFF3303 at 141.435 kb on - strand, within GFF3303 at 141.436 kb on + strand, within GFF3303 at 141.436 kb on + strand, within GFF3303 at 141.437 kb on - strand, within GFF3303 at 141.479 kb on + strand, within GFF3303 at 141.479 kb on + strand, within GFF3303 at 141.480 kb on - strand, within GFF3303 at 141.490 kb on + strand, within GFF3303 at 141.490 kb on + strand, within GFF3303 at 141.491 kb on - strand, within GFF3303 at 141.704 kb on - strand, within GFF3303 at 141.718 kb on + strand, within GFF3303 at 141.718 kb on + strand, within GFF3303 at 141.718 kb on + strand, within GFF3303 at 141.769 kb on - strand, within GFF3303 at 141.769 kb on - strand, within GFF3303 at 141.782 kb on - strand, within GFF3303 at 142.207 kb on + strand at 142.208 kb on - strand at 142.320 kb on - strand at 142.320 kb on - strand at 142.421 kb on - strand, within GFF3304 at 142.879 kb on + strand, within GFF3304 at 142.879 kb on + strand, within GFF3304 at 142.880 kb on - strand, within GFF3304 at 143.093 kb on + strand, within GFF3304 at 143.094 kb on - strand, within GFF3304
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 140,055 + GFF3302 0.47 -0.7 140,055 + GFF3302 0.47 -1.7 140,055 + GFF3302 0.47 +0.5 140,056 - GFF3302 0.47 -1.4 140,056 - GFF3302 0.47 -0.8 140,056 - GFF3302 0.47 -1.1 140,056 - GFF3302 0.47 -0.0 140,076 + GFF3302 0.48 -1.0 140,076 + GFF3302 0.48 -0.9 140,077 - GFF3302 0.48 -0.9 140,510 - GFF3302 0.72 +0.5 140,511 + GFF3302 0.72 +0.3 140,538 + GFF3302 0.73 -1.4 140,539 - GFF3302 0.73 -0.4 140,729 + GFF3302 0.83 -0.0 140,842 - GFF3302 0.89 -0.5 140,908 - +1.4 140,968 - -0.7 141,058 + +0.4 141,059 - -0.5 141,059 - -0.5 141,059 - -0.2 141,059 - +0.4 141,059 - -0.8 141,059 - +0.7 141,167 - GFF3303 0.10 +0.9 141,167 - GFF3303 0.10 -0.5 141,434 + GFF3303 0.34 -2.3 141,435 - GFF3303 0.34 -0.7 141,435 - GFF3303 0.34 -0.2 141,436 + GFF3303 0.34 -0.7 141,436 + GFF3303 0.34 -1.4 141,437 - GFF3303 0.34 +0.4 141,479 + GFF3303 0.38 -0.5 141,479 + GFF3303 0.38 -3.6 141,480 - GFF3303 0.38 -0.5 141,490 + GFF3303 0.39 -0.4 141,490 + GFF3303 0.39 +0.9 141,491 - GFF3303 0.39 +0.2 141,704 - GFF3303 0.57 +0.4 141,718 + GFF3303 0.59 +1.3 141,718 + GFF3303 0.59 -1.3 141,718 + GFF3303 0.59 -0.1 141,769 - GFF3303 0.63 +0.9 141,769 - GFF3303 0.63 +0.1 141,782 - GFF3303 0.64 +0.6 142,207 + -0.1 142,208 - -1.1 142,320 - -1.5 142,320 - -0.4 142,421 - GFF3304 0.20 -0.1 142,879 + GFF3304 0.68 +1.1 142,879 + GFF3304 0.68 -0.6 142,880 - GFF3304 0.68 +0.9 143,093 + GFF3304 0.90 +1.0 143,094 - GFF3304 0.90 -0.4
Or see this region's nucleotide sequence