Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3298 and GFF3299 are separated by 180 nucleotides GFF3299 and GFF3300 are separated by 329 nucleotides GFF3300 and GFF3301 are separated by 65 nucleotides
GFF3298 - Alpha-keto acid-binding periplasmic protein TakP, at 135,123 to 136,214
GFF3298
GFF3299 - Iron-sulfur cluster carrier protein, at 136,395 to 137,546
GFF3299
GFF3300 - Arsenate reductase, at 137,876 to 138,289
GFF3300
GFF3301 - hypothetical protein, at 138,355 to 138,897
GFF3301
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1 at 135.433 kb on + strand, within GFF3298 at 135.433 kb on + strand, within GFF3298 at 135.434 kb on - strand, within GFF3298 at 135.514 kb on + strand, within GFF3298 at 135.535 kb on + strand, within GFF3298 at 135.559 kb on + strand, within GFF3298 at 135.611 kb on - strand, within GFF3298 at 135.611 kb on - strand, within GFF3298 at 135.611 kb on - strand, within GFF3298 at 135.611 kb on - strand, within GFF3298 at 135.728 kb on + strand, within GFF3298 at 135.788 kb on - strand, within GFF3298 at 135.797 kb on - strand, within GFF3298 at 135.913 kb on + strand, within GFF3298 at 135.913 kb on + strand, within GFF3298 at 135.914 kb on - strand, within GFF3298 at 135.914 kb on - strand, within GFF3298 at 135.916 kb on + strand, within GFF3298 at 135.916 kb on + strand, within GFF3298 at 135.917 kb on - strand, within GFF3298 at 135.917 kb on - strand, within GFF3298 at 135.917 kb on - strand, within GFF3298 at 136.073 kb on - strand, within GFF3298 at 136.073 kb on - strand, within GFF3298 at 136.073 kb on - strand, within GFF3298 at 136.073 kb on - strand, within GFF3298 at 136.315 kb on + strand at 136.315 kb on + strand at 136.316 kb on - strand at 136.321 kb on - strand at 136.321 kb on - strand at 136.321 kb on - strand at 136.321 kb on - strand at 137.663 kb on + strand at 137.753 kb on + strand at 137.900 kb on + strand at 137.984 kb on - strand, within GFF3300 at 138.148 kb on + strand, within GFF3300 at 138.149 kb on - strand, within GFF3300 at 138.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 135,433 + GFF3298 0.28 -0.9 135,433 + GFF3298 0.28 +0.4 135,434 - GFF3298 0.28 -0.1 135,514 + GFF3298 0.36 +0.3 135,535 + GFF3298 0.38 +0.9 135,559 + GFF3298 0.40 +1.0 135,611 - GFF3298 0.45 +0.9 135,611 - GFF3298 0.45 -0.9 135,611 - GFF3298 0.45 -0.7 135,611 - GFF3298 0.45 -0.4 135,728 + GFF3298 0.55 +0.2 135,788 - GFF3298 0.61 -0.4 135,797 - GFF3298 0.62 +0.6 135,913 + GFF3298 0.72 -1.0 135,913 + GFF3298 0.72 +0.1 135,914 - GFF3298 0.72 +0.1 135,914 - GFF3298 0.72 -0.8 135,916 + GFF3298 0.73 -0.3 135,916 + GFF3298 0.73 -0.1 135,917 - GFF3298 0.73 -2.1 135,917 - GFF3298 0.73 +0.9 135,917 - GFF3298 0.73 +0.2 136,073 - GFF3298 0.87 -1.1 136,073 - GFF3298 0.87 +1.1 136,073 - GFF3298 0.87 -0.7 136,073 - GFF3298 0.87 +0.8 136,315 + +0.7 136,315 + -1.1 136,316 - -0.5 136,321 - -0.6 136,321 - +1.6 136,321 - -0.1 136,321 - -0.3 137,663 + +0.3 137,753 + +0.6 137,900 + +0.8 137,984 - GFF3300 0.26 -0.2 138,148 + GFF3300 0.66 +0.7 138,149 - GFF3300 0.66 +0.3 138,287 + -0.2
Or see this region's nucleotide sequence