Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3296 and GFF3297 are separated by 208 nucleotides GFF3297 and GFF3298 are separated by 65 nucleotides GFF3298 and GFF3299 are separated by 180 nucleotides
GFF3296 - Glycine--tRNA ligase alpha subunit, at 133,491 to 134,423
GFF3296
GFF3297 - hypothetical protein, at 134,632 to 135,057
GFF3297
GFF3298 - Alpha-keto acid-binding periplasmic protein TakP, at 135,123 to 136,214
GFF3298
GFF3299 - Iron-sulfur cluster carrier protein, at 136,395 to 137,546
GFF3299
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1 at 134.647 kb on + strand at 134.647 kb on + strand at 134.648 kb on - strand at 134.649 kb on - strand at 134.652 kb on + strand at 134.733 kb on + strand, within GFF3297 at 134.734 kb on - strand, within GFF3297 at 134.734 kb on - strand, within GFF3297 at 134.766 kb on + strand, within GFF3297 at 134.766 kb on + strand, within GFF3297 at 134.766 kb on + strand, within GFF3297 at 134.767 kb on - strand, within GFF3297 at 135.160 kb on + strand at 135.190 kb on + strand at 135.190 kb on + strand at 135.223 kb on + strand at 135.286 kb on + strand, within GFF3298 at 135.376 kb on + strand, within GFF3298 at 135.377 kb on - strand, within GFF3298 at 135.377 kb on - strand, within GFF3298 at 135.433 kb on + strand, within GFF3298 at 135.433 kb on + strand, within GFF3298 at 135.434 kb on - strand, within GFF3298 at 135.514 kb on + strand, within GFF3298 at 135.535 kb on + strand, within GFF3298 at 135.559 kb on + strand, within GFF3298 at 135.611 kb on - strand, within GFF3298 at 135.611 kb on - strand, within GFF3298 at 135.611 kb on - strand, within GFF3298 at 135.611 kb on - strand, within GFF3298 at 135.728 kb on + strand, within GFF3298 at 135.788 kb on - strand, within GFF3298 at 135.797 kb on - strand, within GFF3298 at 135.913 kb on + strand, within GFF3298 at 135.913 kb on + strand, within GFF3298 at 135.914 kb on - strand, within GFF3298 at 135.914 kb on - strand, within GFF3298 at 135.916 kb on + strand, within GFF3298 at 135.916 kb on + strand, within GFF3298 at 135.917 kb on - strand, within GFF3298 at 135.917 kb on - strand, within GFF3298 at 135.917 kb on - strand, within GFF3298 at 136.073 kb on - strand, within GFF3298 at 136.073 kb on - strand, within GFF3298 at 136.073 kb on - strand, within GFF3298 at 136.073 kb on - strand, within GFF3298 at 136.315 kb on + strand at 136.315 kb on + strand at 136.316 kb on - strand at 136.321 kb on - strand at 136.321 kb on - strand at 136.321 kb on - strand at 136.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 134,647 + -0.6 134,647 + +1.0 134,648 - +0.1 134,649 - +0.4 134,652 + -0.6 134,733 + GFF3297 0.24 +1.1 134,734 - GFF3297 0.24 +0.0 134,734 - GFF3297 0.24 -0.2 134,766 + GFF3297 0.31 +0.4 134,766 + GFF3297 0.31 -0.8 134,766 + GFF3297 0.31 -0.1 134,767 - GFF3297 0.32 -0.8 135,160 + +0.0 135,190 + -0.7 135,190 + -0.7 135,223 + -0.3 135,286 + GFF3298 0.15 +1.1 135,376 + GFF3298 0.23 +0.1 135,377 - GFF3298 0.23 +1.3 135,377 - GFF3298 0.23 -0.3 135,433 + GFF3298 0.28 -0.9 135,433 + GFF3298 0.28 +0.4 135,434 - GFF3298 0.28 -0.1 135,514 + GFF3298 0.36 +0.3 135,535 + GFF3298 0.38 +0.9 135,559 + GFF3298 0.40 +1.0 135,611 - GFF3298 0.45 +0.9 135,611 - GFF3298 0.45 -0.9 135,611 - GFF3298 0.45 -0.7 135,611 - GFF3298 0.45 -0.4 135,728 + GFF3298 0.55 +0.2 135,788 - GFF3298 0.61 -0.4 135,797 - GFF3298 0.62 +0.6 135,913 + GFF3298 0.72 -1.0 135,913 + GFF3298 0.72 +0.1 135,914 - GFF3298 0.72 +0.1 135,914 - GFF3298 0.72 -0.8 135,916 + GFF3298 0.73 -0.3 135,916 + GFF3298 0.73 -0.1 135,917 - GFF3298 0.73 -2.1 135,917 - GFF3298 0.73 +0.9 135,917 - GFF3298 0.73 +0.2 136,073 - GFF3298 0.87 -1.1 136,073 - GFF3298 0.87 +1.1 136,073 - GFF3298 0.87 -0.7 136,073 - GFF3298 0.87 +0.8 136,315 + +0.7 136,315 + -1.1 136,316 - -0.5 136,321 - -0.6 136,321 - +1.6 136,321 - -0.1 136,321 - -0.3
Or see this region's nucleotide sequence