Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3292 and GFF3293 are separated by 685 nucleotides GFF3293 and GFF3294 are separated by 107 nucleotides
GFF3292 - hypothetical protein, at 127,256 to 127,750
GFF3292
GFF3293 - Glycine--tRNA ligase beta subunit, at 128,436 to 130,634
GFF3293
GFF3294 - Proline/betaine transporter, at 130,742 to 132,049
GFF3294
Position (kb) 128
129
130
131 Strain fitness (log2 ratio) -1
0
1
2 at 127.494 kb on - strand, within GFF3292 at 127.790 kb on + strand at 127.791 kb on - strand at 127.982 kb on - strand at 128.021 kb on - strand at 128.364 kb on + strand at 130.708 kb on - strand at 130.818 kb on + strand at 130.818 kb on + strand at 130.818 kb on + strand at 130.837 kb on + strand at 130.838 kb on - strand at 130.986 kb on + strand, within GFF3294 at 130.986 kb on + strand, within GFF3294 at 130.986 kb on + strand, within GFF3294 at 131.126 kb on - strand, within GFF3294 at 131.262 kb on + strand, within GFF3294 at 131.286 kb on + strand, within GFF3294 at 131.516 kb on + strand, within GFF3294 at 131.516 kb on + strand, within GFF3294 at 131.516 kb on + strand, within GFF3294 at 131.516 kb on + strand, within GFF3294 at 131.517 kb on - strand, within GFF3294 at 131.610 kb on + strand, within GFF3294 at 131.610 kb on + strand, within GFF3294 at 131.610 kb on + strand, within GFF3294 at 131.610 kb on + strand, within GFF3294 at 131.611 kb on - strand, within GFF3294 at 131.611 kb on - strand, within GFF3294
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 127,494 - GFF3292 0.48 -1.7 127,790 + +0.5 127,791 - -0.5 127,982 - +2.1 128,021 - +0.3 128,364 + -0.5 130,708 - -0.9 130,818 + -0.2 130,818 + +1.0 130,818 + +0.9 130,837 + -0.1 130,838 - +0.3 130,986 + GFF3294 0.19 -0.9 130,986 + GFF3294 0.19 -0.0 130,986 + GFF3294 0.19 -0.4 131,126 - GFF3294 0.29 -0.9 131,262 + GFF3294 0.40 +0.4 131,286 + GFF3294 0.42 +0.6 131,516 + GFF3294 0.59 +0.8 131,516 + GFF3294 0.59 -0.4 131,516 + GFF3294 0.59 +1.0 131,516 + GFF3294 0.59 -0.0 131,517 - GFF3294 0.59 -0.0 131,610 + GFF3294 0.66 +0.9 131,610 + GFF3294 0.66 +0.3 131,610 + GFF3294 0.66 -0.1 131,610 + GFF3294 0.66 +0.3 131,611 - GFF3294 0.66 +0.0 131,611 - GFF3294 0.66 +1.0
Or see this region's nucleotide sequence