Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF328 and GFF329 overlap by 4 nucleotides GFF329 and GFF330 are separated by 1 nucleotides GFF330 and GFF331 overlap by 1 nucleotides GFF331 and GFF332 are separated by 7 nucleotides
GFF328 - hypothetical protein, at 334,199 to 336,577
GFF328
GFF329 - hypothetical protein, at 336,574 to 336,954
GFF329
GFF330 - hypothetical protein, at 336,956 to 337,489
GFF330
GFF331 - hypothetical protein, at 337,489 to 337,911
GFF331
GFF332 - hypothetical protein, at 337,919 to 341,665
GFF332
Position (kb) 336
337 Strain fitness (log2 ratio) -1
0
1 at 335.672 kb on + strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.772 kb on - strand, within GFF328 at 335.868 kb on - strand, within GFF328 at 336.200 kb on + strand, within GFF328 at 336.200 kb on + strand, within GFF328 at 336.200 kb on + strand, within GFF328 at 336.463 kb on + strand at 336.607 kb on + strand at 336.607 kb on + strand at 336.608 kb on - strand at 336.608 kb on - strand at 337.237 kb on + strand, within GFF330 at 337.262 kb on + strand, within GFF330 at 337.283 kb on + strand, within GFF330 at 337.317 kb on - strand, within GFF330 at 337.519 kb on + strand at 337.533 kb on + strand, within GFF331 at 337.534 kb on - strand, within GFF331
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 335,672 + GFF328 0.62 -1.3 335,772 - GFF328 0.66 -0.3 335,772 - GFF328 0.66 +0.4 335,772 - GFF328 0.66 -0.2 335,772 - GFF328 0.66 +0.1 335,772 - GFF328 0.66 -1.3 335,868 - GFF328 0.70 +1.5 336,200 + GFF328 0.84 +0.3 336,200 + GFF328 0.84 -0.9 336,200 + GFF328 0.84 +0.6 336,463 + +0.6 336,607 + -0.4 336,607 + -0.7 336,608 - +0.1 336,608 - -0.1 337,237 + GFF330 0.53 -0.6 337,262 + GFF330 0.57 +1.1 337,283 + GFF330 0.61 +0.2 337,317 - GFF330 0.68 -0.2 337,519 + +0.5 337,533 + GFF331 0.10 -0.0 337,534 - GFF331 0.11 +0.4
Or see this region's nucleotide sequence