Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3277 and GFF3278 are separated by 139 nucleotides GFF3278 and GFF3279 are separated by 199 nucleotides GFF3279 and GFF3280 are separated by 72 nucleotides GFF3280 and GFF3281 are separated by 47 nucleotides
GFF3277 - Glutarate-semialdehyde dehydrogenase, at 111,486 to 112,964
GFF3277
GFF3278 - hypothetical protein, at 113,104 to 113,325
GFF3278
GFF3279 - hypothetical protein, at 113,525 to 113,731
GFF3279
GFF3280 - Hydrogenobyrinate a,c-diamide synthase, at 113,804 to 115,138
GFF3280
GFF3281 - Cobalt-precorrin-5B C(1)-methyltransferase, at 115,186 to 116,319
GFF3281
Position (kb) 113
114
115
116 Strain fitness (log2 ratio) -1
0
1 at 113.052 kb on + strand at 113.052 kb on + strand at 113.053 kb on - strand at 113.085 kb on - strand at 113.183 kb on + strand, within GFF3278 at 113.183 kb on + strand, within GFF3278 at 113.183 kb on + strand, within GFF3278 at 113.184 kb on - strand, within GFF3278 at 113.390 kb on + strand at 113.391 kb on - strand at 113.391 kb on - strand at 113.392 kb on + strand at 113.491 kb on + strand at 113.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 113,052 + -0.7 113,052 + -0.6 113,053 - +1.3 113,085 - -0.2 113,183 + GFF3278 0.36 -0.8 113,183 + GFF3278 0.36 +0.4 113,183 + GFF3278 0.36 +1.0 113,184 - GFF3278 0.36 -0.5 113,390 + +0.3 113,391 - -0.0 113,391 - +0.1 113,392 + -0.6 113,491 + +0.2 113,491 + +0.2
Or see this region's nucleotide sequence