Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3270 and GFF3271 are separated by 17 nucleotides GFF3271 and GFF3272 are separated by 201 nucleotides
GFF3270 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 102,711 to 104,501
GFF3270
GFF3271 - hypothetical protein, at 104,519 to 106,519
GFF3271
GFF3272 - hypothetical protein, at 106,721 to 107,764
GFF3272
Position (kb) 104
105
106
107 Strain fitness (log2 ratio) -2
-1
0
1
2 at 103.959 kb on + strand, within GFF3270 at 103.960 kb on - strand, within GFF3270 at 103.960 kb on - strand, within GFF3270 at 103.960 kb on - strand, within GFF3270 at 103.960 kb on - strand, within GFF3270 at 104.016 kb on + strand, within GFF3270 at 104.017 kb on - strand, within GFF3270 at 104.017 kb on - strand, within GFF3270 at 104.017 kb on - strand, within GFF3270 at 104.044 kb on + strand, within GFF3270 at 104.044 kb on + strand, within GFF3270 at 104.045 kb on - strand, within GFF3270 at 104.045 kb on - strand, within GFF3270 at 104.045 kb on - strand, within GFF3270 at 104.045 kb on - strand, within GFF3270 at 104.283 kb on + strand, within GFF3270 at 104.521 kb on - strand at 104.521 kb on - strand at 104.661 kb on + strand at 104.662 kb on - strand at 104.979 kb on + strand, within GFF3271 at 104.980 kb on - strand, within GFF3271 at 105.205 kb on - strand, within GFF3271 at 105.299 kb on - strand, within GFF3271 at 105.348 kb on + strand, within GFF3271 at 105.349 kb on - strand, within GFF3271 at 105.349 kb on - strand, within GFF3271 at 105.477 kb on + strand, within GFF3271 at 105.772 kb on - strand, within GFF3271 at 105.774 kb on + strand, within GFF3271 at 105.774 kb on + strand, within GFF3271 at 105.775 kb on - strand, within GFF3271 at 106.266 kb on + strand, within GFF3271 at 106.359 kb on + strand at 106.359 kb on + strand at 106.360 kb on - strand at 106.524 kb on + strand at 106.711 kb on + strand at 106.711 kb on + strand at 106.855 kb on + strand, within GFF3272 at 106.855 kb on + strand, within GFF3272 at 106.932 kb on + strand, within GFF3272 at 106.932 kb on + strand, within GFF3272 at 106.933 kb on - strand, within GFF3272 at 106.933 kb on - strand, within GFF3272 at 106.933 kb on - strand, within GFF3272 at 106.933 kb on - strand, within GFF3272 at 107.154 kb on + strand, within GFF3272 at 107.202 kb on + strand, within GFF3272 at 107.203 kb on - strand, within GFF3272 at 107.217 kb on + strand, within GFF3272 at 107.392 kb on + strand, within GFF3272 at 107.393 kb on - strand, within GFF3272 at 107.509 kb on - strand, within GFF3272
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 103,959 + GFF3270 0.70 -0.9 103,960 - GFF3270 0.70 -0.5 103,960 - GFF3270 0.70 -0.1 103,960 - GFF3270 0.70 +0.4 103,960 - GFF3270 0.70 +0.0 104,016 + GFF3270 0.73 -2.2 104,017 - GFF3270 0.73 +0.2 104,017 - GFF3270 0.73 -0.3 104,017 - GFF3270 0.73 -1.3 104,044 + GFF3270 0.74 +0.1 104,044 + GFF3270 0.74 -0.6 104,045 - GFF3270 0.74 +0.1 104,045 - GFF3270 0.74 +0.7 104,045 - GFF3270 0.74 -1.7 104,045 - GFF3270 0.74 -0.1 104,283 + GFF3270 0.88 -1.3 104,521 - +1.1 104,521 - +0.3 104,661 + -1.5 104,662 - +0.6 104,979 + GFF3271 0.23 -0.9 104,980 - GFF3271 0.23 +0.1 105,205 - GFF3271 0.34 -0.8 105,299 - GFF3271 0.39 +0.3 105,348 + GFF3271 0.41 +0.3 105,349 - GFF3271 0.41 +0.9 105,349 - GFF3271 0.41 -0.4 105,477 + GFF3271 0.48 -0.9 105,772 - GFF3271 0.63 -0.1 105,774 + GFF3271 0.63 -0.7 105,774 + GFF3271 0.63 +0.9 105,775 - GFF3271 0.63 +0.4 106,266 + GFF3271 0.87 -0.5 106,359 + +0.8 106,359 + -0.4 106,360 - +0.2 106,524 + -1.7 106,711 + +2.0 106,711 + +2.4 106,855 + GFF3272 0.13 +1.1 106,855 + GFF3272 0.13 -0.9 106,932 + GFF3272 0.20 +0.7 106,932 + GFF3272 0.20 +0.5 106,933 - GFF3272 0.20 -0.6 106,933 - GFF3272 0.20 -0.2 106,933 - GFF3272 0.20 +0.4 106,933 - GFF3272 0.20 +0.2 107,154 + GFF3272 0.41 -0.1 107,202 + GFF3272 0.46 +0.6 107,203 - GFF3272 0.46 -0.6 107,217 + GFF3272 0.48 -0.3 107,392 + GFF3272 0.64 -1.2 107,393 - GFF3272 0.64 -0.1 107,509 - GFF3272 0.75 -0.9
Or see this region's nucleotide sequence