Strain Fitness in Xanthobacter sp. DMC5 around GFF3266

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3265 and GFF3266 are separated by 560 nucleotidesGFF3266 and GFF3267 are separated by 221 nucleotides GFF3265 - Allophanate hydrolase, at 98,482 to 98,937 GFF3265 GFF3266 - hypothetical protein, at 99,498 to 99,773 GFF3266 GFF3267 - Histone deacetylase-like amidohydrolase, at 99,995 to 100,924 GFF3267 Position (kb) 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 98.902 kb on + strandat 98.902 kb on + strandat 98.902 kb on + strandat 98.903 kb on - strandat 98.935 kb on + strandat 98.935 kb on + strandat 98.936 kb on - strandat 99.170 kb on - strandat 99.209 kb on + strandat 99.224 kb on + strandat 99.224 kb on + strandat 99.772 kb on - strandat 100.233 kb on - strand, within GFF3267at 100.356 kb on + strand, within GFF3267at 100.357 kb on - strand, within GFF3267at 100.383 kb on + strand, within GFF3267

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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98,902 + +1.2
98,902 + -0.4
98,902 + +0.3
98,903 - -0.6
98,935 + -0.4
98,935 + +0.4
98,936 - -0.7
99,170 - +1.4
99,209 + -2.1
99,224 + +2.3
99,224 + +0.5
99,772 - +0.5
100,233 - GFF3267 0.26 -0.7
100,356 + GFF3267 0.39 -0.3
100,357 - GFF3267 0.39 -0.2
100,383 + GFF3267 0.42 -2.8

Or see this region's nucleotide sequence