Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3260 and GFF3261 overlap by 4 nucleotides GFF3261 and GFF3262 are separated by 10 nucleotides GFF3262 and GFF3263 are separated by 11 nucleotides GFF3263 and GFF3264 are separated by 5 nucleotides
GFF3260 - hypothetical protein, at 91,813 to 92,625
GFF3260
GFF3261 - Vitamin B12 import ATP-binding protein BtuD, at 92,622 to 93,446
GFF3261
GFF3262 - hypothetical protein, at 93,457 to 94,266
GFF3262
GFF3263 - hypothetical protein, at 94,278 to 94,925
GFF3263
GFF3264 - Carbamoyl-phosphate synthase large chain, at 94,931 to 98,473
GFF3264
Position (kb) 93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 92.504 kb on - strand, within GFF3260 at 92.530 kb on + strand, within GFF3260 at 92.530 kb on + strand, within GFF3260 at 92.531 kb on - strand, within GFF3260 at 92.658 kb on + strand at 92.659 kb on - strand at 92.659 kb on - strand at 92.866 kb on - strand, within GFF3261 at 92.866 kb on - strand, within GFF3261 at 93.030 kb on + strand, within GFF3261 at 93.509 kb on - strand at 93.631 kb on + strand, within GFF3262 at 93.632 kb on - strand, within GFF3262 at 93.745 kb on + strand, within GFF3262 at 93.746 kb on - strand, within GFF3262 at 93.746 kb on - strand, within GFF3262 at 93.746 kb on - strand, within GFF3262 at 94.150 kb on + strand, within GFF3262 at 94.150 kb on + strand, within GFF3262 at 94.150 kb on + strand, within GFF3262 at 94.151 kb on - strand, within GFF3262 at 94.151 kb on - strand, within GFF3262 at 94.212 kb on - strand at 94.212 kb on - strand at 94.212 kb on - strand at 94.424 kb on + strand, within GFF3263 at 94.424 kb on + strand, within GFF3263 at 94.434 kb on + strand, within GFF3263 at 94.434 kb on + strand, within GFF3263 at 94.434 kb on + strand, within GFF3263 at 94.435 kb on - strand, within GFF3263 at 94.461 kb on + strand, within GFF3263 at 94.461 kb on + strand, within GFF3263 at 94.462 kb on - strand, within GFF3263 at 94.475 kb on + strand, within GFF3263 at 94.475 kb on + strand, within GFF3263 at 94.476 kb on - strand, within GFF3263 at 94.500 kb on + strand, within GFF3263 at 94.500 kb on + strand, within GFF3263 at 94.500 kb on + strand, within GFF3263 at 94.501 kb on - strand, within GFF3263 at 94.501 kb on - strand, within GFF3263 at 94.501 kb on - strand, within GFF3263 at 94.501 kb on - strand, within GFF3263 at 94.501 kb on - strand, within GFF3263 at 94.644 kb on + strand, within GFF3263 at 94.644 kb on + strand, within GFF3263 at 94.800 kb on + strand, within GFF3263 at 95.007 kb on + strand at 95.007 kb on + strand at 95.008 kb on - strand at 95.008 kb on - strand at 95.108 kb on + strand at 95.108 kb on + strand at 95.108 kb on + strand at 95.109 kb on - strand at 95.109 kb on - strand at 95.109 kb on - strand at 95.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 92,504 - GFF3260 0.85 +1.3 92,530 + GFF3260 0.88 +1.0 92,530 + GFF3260 0.88 +2.6 92,531 - GFF3260 0.88 -0.1 92,658 + +2.3 92,659 - +1.3 92,659 - -1.3 92,866 - GFF3261 0.30 -0.3 92,866 - GFF3261 0.30 -0.5 93,030 + GFF3261 0.49 +1.0 93,509 - -0.0 93,631 + GFF3262 0.21 -0.7 93,632 - GFF3262 0.22 -0.0 93,745 + GFF3262 0.36 -0.9 93,746 - GFF3262 0.36 +0.5 93,746 - GFF3262 0.36 +1.3 93,746 - GFF3262 0.36 -1.0 94,150 + GFF3262 0.86 +0.2 94,150 + GFF3262 0.86 -0.2 94,150 + GFF3262 0.86 -0.0 94,151 - GFF3262 0.86 -2.8 94,151 - GFF3262 0.86 -0.7 94,212 - +0.2 94,212 - +1.5 94,212 - +0.3 94,424 + GFF3263 0.23 +0.2 94,424 + GFF3263 0.23 +1.1 94,434 + GFF3263 0.24 -0.3 94,434 + GFF3263 0.24 +0.5 94,434 + GFF3263 0.24 -0.7 94,435 - GFF3263 0.24 -0.1 94,461 + GFF3263 0.28 -0.2 94,461 + GFF3263 0.28 -0.0 94,462 - GFF3263 0.28 -1.3 94,475 + GFF3263 0.30 -0.9 94,475 + GFF3263 0.30 -0.4 94,476 - GFF3263 0.31 -0.3 94,500 + GFF3263 0.34 +0.9 94,500 + GFF3263 0.34 +0.1 94,500 + GFF3263 0.34 -1.6 94,501 - GFF3263 0.34 -0.0 94,501 - GFF3263 0.34 +0.5 94,501 - GFF3263 0.34 -0.3 94,501 - GFF3263 0.34 +0.4 94,501 - GFF3263 0.34 -0.0 94,644 + GFF3263 0.56 -0.6 94,644 + GFF3263 0.56 +1.3 94,800 + GFF3263 0.81 -0.8 95,007 + +0.0 95,007 + -0.2 95,008 - +0.4 95,008 - -1.7 95,108 + -0.7 95,108 + +0.1 95,108 + +0.7 95,109 - -1.7 95,109 - +0.3 95,109 - -1.1 95,109 - +0.1
Or see this region's nucleotide sequence