Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3258 and GFF3259 are separated by 387 nucleotides GFF3259 and GFF3260 are separated by 329 nucleotides
GFF3258 - hypothetical protein, at 88,829 to 89,992
GFF3258
GFF3259 - hypothetical protein, at 90,380 to 91,483
GFF3259
GFF3260 - hypothetical protein, at 91,813 to 92,625
GFF3260
Position (kb) 90
91
92 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.442 kb on + strand, within GFF3258 at 89.442 kb on + strand, within GFF3258 at 89.448 kb on + strand, within GFF3258 at 89.449 kb on - strand, within GFF3258 at 89.449 kb on - strand, within GFF3258 at 89.673 kb on + strand, within GFF3258 at 90.213 kb on + strand at 90.214 kb on - strand at 90.527 kb on + strand, within GFF3259 at 90.528 kb on - strand, within GFF3259 at 90.528 kb on - strand, within GFF3259 at 90.528 kb on - strand, within GFF3259 at 90.528 kb on - strand, within GFF3259 at 90.629 kb on + strand, within GFF3259 at 90.629 kb on + strand, within GFF3259 at 90.629 kb on + strand, within GFF3259 at 90.629 kb on + strand, within GFF3259 at 90.851 kb on + strand, within GFF3259 at 90.942 kb on - strand, within GFF3259 at 90.942 kb on - strand, within GFF3259 at 90.942 kb on - strand, within GFF3259 at 91.894 kb on + strand at 91.894 kb on + strand at 91.894 kb on + strand at 91.895 kb on - strand, within GFF3260 at 92.017 kb on + strand, within GFF3260 at 92.158 kb on - strand, within GFF3260 at 92.158 kb on - strand, within GFF3260
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 89,442 + GFF3258 0.53 -0.3 89,442 + GFF3258 0.53 +1.3 89,448 + GFF3258 0.53 -0.3 89,449 - GFF3258 0.53 +0.7 89,449 - GFF3258 0.53 +0.5 89,673 + GFF3258 0.73 -0.0 90,213 + +2.1 90,214 - -2.3 90,527 + GFF3259 0.13 +0.5 90,528 - GFF3259 0.13 -0.1 90,528 - GFF3259 0.13 +0.1 90,528 - GFF3259 0.13 -1.1 90,528 - GFF3259 0.13 -0.7 90,629 + GFF3259 0.23 -0.4 90,629 + GFF3259 0.23 -0.7 90,629 + GFF3259 0.23 +0.9 90,629 + GFF3259 0.23 -1.7 90,851 + GFF3259 0.43 -2.4 90,942 - GFF3259 0.51 -1.4 90,942 - GFF3259 0.51 +0.0 90,942 - GFF3259 0.51 -0.2 91,894 + +0.5 91,894 + -0.4 91,894 + +0.7 91,895 - GFF3260 0.10 -0.9 92,017 + GFF3260 0.25 -0.1 92,158 - GFF3260 0.42 +1.7 92,158 - GFF3260 0.42 +0.4
Or see this region's nucleotide sequence